BAC Information

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BAC

Clone NameMSMg01-069K14
Chromosome6 (Build37)
Map Location 44,391,462 - 44,391,581
singlet/doubletsinglet
Overlap genenone
Upstream geneTpk1, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069K14.T7 (MSMg01no069_k14.b1)MSMg01-069K14.TJ (MSMg01no069_k14.g1)
ACCAG293866AG293867
length700726
length of high quality
(start - end)
273 (68 - 340)122 (55 - 176)
definitionCHROMAT_FILE: MSMg01no069_k14.b1 PHD_FILE: MSMg01no069_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:29 2005CHROMAT_FILE: MSMg01no069_k14.g1 PHD_FILE: MSMg01no069_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTTGCCGAGACCCCATTTTTAATGTGGTTATTTGAATTTCTGG
AGTCCAGCTTCTTGAGCTCTTTGATATATTGGGCATTAGACCCCTTTCAG
ATTTAGGATAGGTGAAAATCCTTTCCCAATCTCTTGGTGGCCTCTTTGTC
TTATTGACAGTATCCTTTGCCTTAGAGTACCCAAGATACATTATGCAAAA
TACAAAAAATCAAGAAGATGGAAGACCAACGTGTGGATACTTCATTCCTC
TTTAGAAAAGGGAACATTATACCCATGGAAGGAGTTACTAAGACAAAATT
TGTAGGTAATATGAAAGGATGCACCATCCAGAGACTACCCCACCCGGGGA
TCCATCCGATAATCAGCCACCAAAACTAGACACTATTGCACATGCCAGCA
AGATTTTGTTGATAGGACCCTACTATAGCTGTCTCTTGCGAGGCTATGCC
AGTGCCTGGCAAATACAGAAGTGGATGTTCATAGCCATCTATTGGATGTA
ACATATGGTCTCTATCGTAGGAGCTAGATATCGCTTCCTAGAAACTGATC
AGGTACGCATTCCTATAGGTGGAACAACTATATGAATTAACCTGTATCTT
TTACGTTCATGTCTCTTATTGCATTTTGTTTCCCATTATGGCCTTTTCTC

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGTGAATTCAGCAAACGTTATTGTTATCTGAGGAGATCTGAGGAGA
TGCAATGAAATAGTCTAGTTTTTAGCATCTACCACTCTGATCATTTAGCA
ACTGCCAGGACAGAGGTGAGGTCTTCAGAAAAGAATTCTAACTAGCAATA
ATTCTAACTTGGTTGATCACTACCATTATTTTTAGGAGTAGTATATATGT
TACATCTTTGCAGCTGAAAATACCTTTGCACATTAGGCTGCAGTGCTCTA
TTTGTACTGTATGCAAGTTCAATGCTCGAGCACATCGTTTTATGTTTTGT
CCCCCCCCCCCCCGATGCTTTCCTCTTAGTATCTTTGTGGCTTTTCCCTA
CTATACACAAAAAAAAATAGTTGGGGGGGGGGGGTCGCCTTCCCCTACAA
CTGGACTTTTCCCCTTGTGTTTACATCTTTTCCAGCTGTTATATCTACTT
CTTCCTTTTTCCTTTCTCTGTTTCTATTGATTTTCCCCTCTGTTTTTCGC
CTTTCATTTCTCACTTGCTCCCTTTTCTTTTACCTCCATCCTTATTCCCT
TCCTCTATTCCTTCATTGCCTCCTATTTTATTTGTTTTTACGTTTCTCCA
TTCTTTTTATTCCGCTTATTCCCTACTTTCTTTTAACTTATTATATTATC
CTTTTCATTCTTTTTTTTTCCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_k14.g1 MSMg01no069_k14.g1 CHROMAT_FILE:
MSMg01no069_k14.g1 PHD_FILE: MSMg01no069_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:29 2005
         (122 letters)



>mm_chr6_44391260_44391781
          Length = 522

 Score =  209 bits (108), Expect = 5e-59
 Identities = 117/120 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgaattcagcaaacgttattgttatctgaggagatctgaggagatgcaatgaaatagtct 62
           ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct: 203 tgaattcagcaaacgttattgttatctgaggagatctgatgtgatggaatgaaatagtct 262

                                                                       
Query: 63  agtttttagcatctaccactctgatcatttagcaactgccaggacagaggtgaggtcttc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtttttagcatctaccactctgatcatttagcaactgccaggacagaggtgaggtcttc 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)