BAC Information

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BAC

Clone NameMSMg01-069O23
Chromosome6 (Build37)
Map Location 86,977,568 - 86,977,794
singlet/doubletsinglet
Overlap geneNfu1
Upstream geneAdd2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555
Downstream geneGfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O23.T7 (MSMg01no069_o23.b1)MSMg01-069O23.TJ (MSMg01no069_o23.g1)
ACCAG294075AG294076
length679687
length of high quality
(start - end)
54 (247 - 300)237 (127 - 363)
definitionCHROMAT_FILE: MSMg01no069_o23.b1 PHD_FILE: MSMg01no069_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:49 2005CHROMAT_FILE: MSMg01no069_o23.g1 PHD_FILE: MSMg01no069_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCCACAGCGCCATATTTCCTTATCCGCAAANNCAGNANNGACTTTCN
NAACGNGAGAGCANNGNNNNAAGGNGAGAAGANCAGGAGGGAGGAGGTTC
TCACACANAGACACAGGACNACNAAACNCACAAGGAGNNACAAAAAGNAA
CCNCCCGGCCAAAAACCAAAAACGAAAGAGGCAGCCAGGCAGAGGCGGCA
CAAGCCCNCAACCCCAGNACNCGGGGAAACAGAGTTTTTTGGGCCNCTGT
GAGTTTAAGGCCAGCATGGTCTAAAGAGCAAGTTCCAAGAAAGCCAGGGT
TTCACTCATTTAACCAGNCNCAAAAACAAACAAACCAAAAACTTTTTTTT
TCCCCCCCACTCCCCGCCATATTTCACACATATAAACCCCAGAACTCACT
AGGCTGAAAAAAAAAAAATACTATGAGTTGGAAGCCTGCCTGGGCTACTA
GAGGAGTTTTGTATCAGACTAGACTAGAATGAGCATCCTGCTTCACCCAA
TACCTATAAACTGAGGACTAGTAAGGTACAATGTTGGGCGAAATGAAAGA
AGTATACTATATGATGTTGTGCCTATGCCAACACTGATACTCACCCTTCT
ACTATGCCACTCACACACTGCATACCAAAAACAGATTCTTTTTTTTTTTT
TTTCCGCAGGGTACACCAAAAGGTCCTTG
CAATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCGAAAATCCAGGACAGCCAGGGATACACAGAGAAAC
CCTGTCTCGAAAAAAATCTACCACCAAAAGAGTTCAAGGTCACTGTCTGC
TATACAGCAAGCCCTAGGGCCAGTCTAGATGACTTGAGACTTCACCTCAA
AAAAACAAAAGATTGAGACATGATCTCCATGTCCAGCCTTTGCAGACTGA
TCTAATTTCAAGGTTCCTCTTGTGTACCATGGTGTGTGTACATACACACA
CACATACATGATAAGTAAAATGAAACTAATTTTTTTTTTTAAATAGGGCA
TGGAGATACTTGTGTTTATTTTTAGCACTCCCGAGATAGAAGCAGGCAAA
TCTCTTATGAGTTCCAGGCCAGCCTGGACAATAAAGAAAGTTCCAAGGCT
TCATACTAAGAAATAATTTTTTTTTAAAAGACCCTCTCCAATCTCCTAAA
ATATTAAAGAAAAAAACCTACAAATTATTTTATTTTGATTTTAAACCTTA
AAGAACTGTAAAGATTTTCAGGTAAGAAAATATTTAAAGGGAAAAAGACC
AGGCTAGTCCCTCTGTGGGCTGATATGATATTGGATAATAAAGGTCCACG
CCTCTGCTAAGCAAGCTATAGAAAGCTCCGTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o23.g1 MSMg01no069_o23.g1 CHROMAT_FILE:
MSMg01no069_o23.g1 PHD_FILE: MSMg01no069_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:49 2005
         (237 letters)



>mm_chr6_86977281_86977914
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 226/230 (98%), Gaps = 3/230 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagagttcaaggtcactgtctgctatacagcaagccctagggccagtctagatgacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaagagttcaaggtcactgtctgctatacagcaagccctagggccagtctagatgacttg 455

                                                                       
Query: 61  agacttcacctcaaaaaaacaaaagattgagacatgatctccatgtccagcctttgcaga 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 454 agacttcacctcaaaaaaacaaaagaatgagacatgatctccatgtccagcctttgcaga 395

                                                                       
Query: 121 ctgatctaatttcaaggttcctcttgtgtaccatggtgtgtgtacatacacacacacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgatctaatttcaaggttcctcttgtgtaccatggtgtgtgtacatacacacacacata 335

                                                             
Query: 181 catgataagtaaaatgaaactaatttttttttttaaatagggcatggaga 230
           ||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 334 catgataagtaaaatgaaacta---tttttttttaaatagggcatggaga 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 634
Length adjustment: 9
Effective length of query: 228
Effective length of database: 625
Effective search space:   142500
Effective search space used:   142500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)