BAC Information

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BAC

Clone NameMSMg01-070D03
Chromosome6 (Build37)
Map Location 42,094,611 - 42,094,852
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139
Downstream geneTas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070D03.T7 (MSMg01no070_d03.b1)MSMg01-070D03.TJ (MSMg01no070_d03.g1)
ACCAG294274AG294275
length779671
length of high quality
(start - end)
243 (155 - 397)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no070_d03.b1 PHD_FILE: MSMg01no070_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:10 2005CHROMAT_FILE: MSMg01no070_d03.g1 PHD_FILE: MSMg01no070_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTCCATCTTTNAATCTATAAXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAGACTG
CCCACCTTGCGTCAAATGCTTCTGCTCATCATGAATCGCATAGTTAGTCA
CATTCTCCTATAACACCACAGAAATGGCTATGGCACTGAGGTTTAACAAC
ATATGTAGTATTTACTTGAGAAACACAAATCACATAATTTAAGTAGGTAA
GCCGAGAGTTCACAGAGAAGCACCACTGAATATTTTATATGCATTTTTTG
AGTCGACAAGAAAAATATCTTTTGGTCATGGACTGAAGGTTGTATAATGA
TAGAAAAACATTTTGCAGATTAAGCATGTTTCATGTACTCCAGAAAATCT
GGATAAAAGTCATCTGTTAATATTTTTTTTGTCACACTATTCCAGAATTT
TACATAGGAATATAAATGCCAAATATGTGTCTCTTGGAAAGTAGAAAGAA
GAAAAAAATCTGCCTACATGGTATTGCCATAAAAACAGACCCCTTGATCA
AATGTAATCAAACTAAAGAACATTAATATAACCCATAAATCCACAGACTT
ATGGCTATTTTGTTTTATGTTTCTTGATTTTATGTTTTTTTTTGTACACC
GGGTTTACTCTGTATAGACCCTTCTTTTCCTGTAAACTCTTTCTGTCAAA
ATAAGTCTGGCCTGGTAACCTTAAATTTC
TTTTCGATGCAGTGGTAGCCTGGAGGCGCCTGTTCACAACATTAGGTGAC
CTATAGAATTACCTGCGGAATTCCTGATCTTTCCAGAACTTTTATCATGA
ATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGA
TTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGT
CAGGATGGATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATT
TTATTGAGGATTTTTGTTTCTTTATTCATAATAGAAATTGGTCTGAAGTT
CTCTATCTTTGTTGCATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGG
CTTCATAAAATGAGTTGTGTAGAGTACTTTCTACTTCTATCTTGGGAAAA
AGTTTGTGCAAAACTGTAATTAGATCTTCTTTGAAGGTCTGATAGAACTC
TGTACTAAACCCGTCTGGTCCTGGTCTTTTTTTGGCTTGGAGACCATTTA
TAACTGCTTCTATTTTCTTTAGATAATATTGTACTGTTTAAAATGTTAAC
TTGATCCTGATTCCCGTTTGTTAACCTGTTATGCGGTCCCAAATTTTGCT
TATTTTGTCCAGTATTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_d03.b1 MSMg01no070_d03.b1 CHROMAT_FILE:
MSMg01no070_d03.b1 PHD_FILE: MSMg01no070_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:10 2005
         (243 letters)



>mm_chr6_42094411_42095052
          Length = 642

 Score =  431 bits (223), Expect = e-125
 Identities = 238/243 (97%), Gaps = 1/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttgcgtcaaatgcttctgctcatcatgaatcgcatagttagtcacattctcctataac 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 ccttgcgtcaaatgcttctgctcatcatgaatcgcagagttagtcacattctcctataac 383

                                                                       
Query: 61  accacagaaatggctatggcactgaggtttaacaacatatgtagtatttacttgagaaac 120
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 accacagaaacggctatggcactgaggtttaacaacatatgtagtatttacttgag-aac 324

                                                                       
Query: 121 acaaatcacataatttaagtaggtaagccgagagttcacagagaagcaccactgaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaaatcacataatttaagtaggtaagccgagagttcacagagaagcaccactgaatatt 264

                                                                       
Query: 181 ttatatgcattttttgagtcgacaagaaaaatatcttttggtcatggactgaaggttgta 240
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 263 ttatatgcattttttcagtcgacaaggaaaatatcttttggtcatggactgaaggttgta 204

              
Query: 241 taa 243
           |||
Sbjct: 203 taa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space:   148122
Effective search space used:   148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)