BAC Information

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BAC

Clone NameMSMg01-071P10
Chromosome6 (Build37)
Map Location 145,916,643 - 145,916,967
singlet/doubletsinglet
Overlap genenone
Upstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071P10.T7 (MSMg01no071_p10.b1)MSMg01-071P10.TJ (MSMg01no071_p10.g1)
ACCAG295621AG295622
length698697
length of high quality
(start - end)
42 (79 - 120)330 (72 - 401)
definitionCHROMAT_FILE: MSMg01no071_p10.b1 PHD_FILE: MSMg01no071_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:32 2005CHROMAT_FILE: MSMg01no071_p10.g1 PHD_FILE: MSMg01no071_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATAGAATCATTAATTCATCTAAACAGCATTAATTCGTGAAAGTTCA
TCTTTATGTTGATCTCCAGAAAATCTGATCAATAGGGTGGCCTAATGTCC
AGGGATTATTATATTGGTTTAATAATGACAGGAAAGCATATCAGTTGTGA
GAAGCATTCCTGAGGTGAAATCCCTTTAGAATCTTGCCGGTGAGCTTACC
CATCACAGACCATGCTGAAGTGGTGGGCTATCTCCAGGAAGGGCACCTGC
TAACCTCATCCTATCCTAGATGATTCCTGACACCATACCTACTTTTTATG
ATCTAGTGTAAAATCACTTATAGTTCTCACGATAAATATGACGGTGATCA
AGATTACCATCACAAACAGAGAAGACCATTCACACCAGGCATGGTTTCCT
GGCTTACATTCCTGGGTAGGGAGATCACAGAGTCACCACTTCCTGCTCAG
ATTCTGCCCATTGGGTGCCCCCTGGATTGCTGTCCACTGACACCTCATCT
TTCATTATCTCACTCATGTAGAAGAGCCGGCAGCAGCATCCTGTGTGAGC
CTGTGTAACATGACCATCTGCCTTTGCTGATGTTGTCTATGCCTTTATTG
ACTCTAGAGATTTAGCCAGCTTAGTGTCCTGCATCAAATCTTTGGCCA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGCAGTAGTTCCTGGCCCCTGTCTGGTT
CCAGGAGCATTGCTGAAAGCACACCAAGGTTGACTGACTTTTCTCAGACC
CCAGGGCTTCTCTTCATCTCACACAGAACACCCTCAGATGCTGGCCTGGC
TCCATACCAGCCCAGAGGGGGATGCCAGCCAATAAGCAGGAAAAACTCCC
AAACTGTAACTTAACAGAGTGATCTTTTTTTTTTTTTTTAATTCCCAAAA
TGTGTTTTCCCCAGTCTTTGAGCACAGACCTGTGGTTTTTGTCTCCCCTG
GCTTTACAGCCTCTGCCTCAAGCCAAGAGACTTGTTTCTGCTTCCCCCTG
ATTCATAGTCCCCCCTGTAAGCTGAACCTAGGAAGCCTCGGCCCCCACTT
CTCTCCCTAGAACCACCAGACCACACCACCTCCTGTACTCTCAGTTCTTT
TGCCTGAGTGTCCTGCCTCCTCTTTGTTTGGAAAACGCCATCTTACGTAA
CTCCAGATCCTACTAAATGCTCCTTTGCCTTCTACTTGGGAGCATTCAGA
ACACCCTCTTACTGACTTTTGATTTATCACTACGATAGAATCTTTCGCCT
GTAATCTCCTCAGCCCTTGGAACCGGTCTCACCTGTCTCACAGCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_p10.g1 MSMg01no071_p10.g1 CHROMAT_FILE:
MSMg01no071_p10.g1 PHD_FILE: MSMg01no071_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:32 2005
         (330 letters)



>mm_chr6_145916443_145917167
          Length = 725

 Score =  584 bits (302), Expect = e-171
 Identities = 321/330 (97%), Gaps = 5/330 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcagtagttcctggcccctgtctggttccaggagcattgctgaaagcacaccaaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcagtagttcctggcccctgtctggttccaggagcattgctgaaagcacaccaaggtt 260

                                                                       
Query: 61  gactgacttttctcagaccccagggcttctcttcatctcacacagaacaccctcagatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgacttttctcagaccccagggcttctcttcatctcacacagaacaccctcagatgc 320

                                                                       
Query: 121 tggcctggctccataccagcccagagggggatgccagccaataagcaggaaaaactccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcctggctccataccagcccagagggggatgccagccaataagcaggaaaaactccca 380

                                                                       
Query: 181 aactgtaacttaacagagtgatctttttttttttttttaattcccaaaatgtgttttccc 240
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 381 aactgtaacttaacagagtgatctttttttttt-----aattcccaaaatgtgttttccc 435

                                                                       
Query: 241 cagtctttgagcacagacctgtggtttttgtctcccctggctttacagcctctgcctcaa 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagtccatgagcacagacctgtggtttttgtctcccctggctttacagcctctgcctcaa 495

                                         
Query: 301 gccaagagacttgtttctgcttccccctga 330
           |||||||||||||  |||||||||||||||
Sbjct: 496 gccaagagacttggctctgcttccccctga 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 725
Length adjustment: 9
Effective length of query: 321
Effective length of database: 716
Effective search space:   229836
Effective search space used:   229836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)