BAC Information

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BAC

Clone NameMSMg01-072D17
Chromosome6 (Build37)
Map Location 83,513,057 - 83,620,602
singlet/doubletdoublet
Overlap geneStambp, LOC664956, Clec4f
Upstream genePole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2
Downstream geneCd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072D17.T7 (MSMg01no072_d17.b1)MSMg01-072D17.TJ (MSMg01no072_d17.g1)
ACCAG295826AG295827
length721721
length of high quality
(start - end)
374 (46 - 419)321 (68 - 388)
definitionCHROMAT_FILE: MSMg01no072_d17.b1 PHD_FILE: MSMg01no072_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:53 2005CHROMAT_FILE: MSMg01no072_d17.g1 PHD_FILE: MSMg01no072_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,513,057 - 83,513,425)(83,620,282 - 83,620,602)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTACTTTAAATCATGATATACCTTAGCTGCTGCCTGCTCTCTCA
AACAAGGCTATAAAATAAAATCCAAGCTTAGACCTTCTAAGCTTGGGGCC
TCCAAAACTTTTCTAGTGGTTATTTAAATACAGTGAGTGATATTTGAACT
AAAAAGTATCTAATAATAAACCCCTTCCACTTAATAATGCCTTAGGAATG
TATGGCTCAGAGCTACTAATCCTGCTAATAGTCAGCACCGGTGTGCAGGA
CAGCACCGCAGACAGCTACCCATCAGCATGCAGGACACCCCTCCAGTGTG
TATCTCGGCCCTACAGGCAGACGCTGTAGGGCCCTGAGTGTTTCTCCGCA
GGCTGGAACTAACTATTCCAACTAAATAAGACTCACTACACACCACTGGG
AGAATCAGTGACTATAAAAAGTCATTGATTATTTTGGGATAAGCACATGA
CCTAAACTTCCCACTCCTGAGATCCGAAATGCCTTATGCTCTGGGGAGAG
TCTTCACTGTGGGCAGGTTTCTTGCTGTAGATATGGCAGAAGGGTCACAG
GTGTCTGTCCCCAGGTCGCCCTCTTGGACACCTAGGTCAAATCTGTTAGA
ATCCTTCACACCCCTACTGGTTGGCGACTCTTTTGAGGCACTGACCTTTG
TGCCCCCACCCCCCAAACAAG
GTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATGGGAACAGCAGCTCTCTGTCGCCCTGTCCT
TGCCATGTTCCATCACCTCTTGATCCGAGTTCTCTGAAGCCTGAATCCCC
ATTTCCTTGAGTGAGCTAATCCAGAGCAGTTCAGGGCTGCAGATCTTCTG
TTTGAGCTGCCTGGCTCAGCTCCCCTCCCTCCTGCCACCAGGCCTTCATA
TGCCCAGGCCACCATAGTCATCTCGGCCTCCTCCGCTCCTCTCCATGTGC
TCCCCTCTGGTTATGATAGTCTTGTCTACTCTAAACACCTCTTGGCTCAA
AGATTTCCTTGGAGTGCTTGTTTTCATTCCCAGTGACCACTGCTGAACTG
CAAAGAACATGNCACACTCGGGGGGTTATCCAGATAGAGGGCAAAAAAGA
AGAATAAGGGCAGTCTGTCTCTGGAAAAGCCACCAGCCACCAGCAGGAGA
GCTTATATTCAGTTTTTATGTGTGTGAAATAAGGTGAGGTTTGATAAGTT
TCTTCAGGGGGCTCCTGGGTAGCAATTCTTCTGTCCTCTAGACCTCCTCC
CAGGGGATCTGTCCTGAGGTCCCCCCCCCATTTTTTTTTATAAAGACTGG
GTATCTAGATATAAGTCAGAATCTATGTCAGAAATAAAGGCCTGATAAGA
GATGCCACCACATGTGGCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_d17.b1 MSMg01no072_d17.b1 CHROMAT_FILE:
MSMg01no072_d17.b1 PHD_FILE: MSMg01no072_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:53 2005
         (374 letters)



>mm_chr6_83512853_83513626
          Length = 774

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttactttaaatcatgatataccttagctgctgcctgctctctcaaacaaggct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttactttaaatcatgatataccttagctgctgcctgctctctcaaacaaggct 264

                                                                       
Query: 65  ataaaataaaatccaagcttagaccttctaagcttggggcctccaaaacttttctagtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataaaataaaatccaagcttagaccttctaagcttggggcctccaaaacttttctagtgg 324

                                                                       
Query: 125 ttatttaaatacagtgagtgatatttgaactaaaaagtatctaataataaaccccttcca 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 ttatttaaatacagtgagtgatatttgaactaaaaagtatcaaataataaaccccttcca 384

                                                                       
Query: 185 cttaataatgccttaggaatgtatggctcagagctactaatcctgctaatagtcagcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 cttaataatgccttaggaatgtatggctcagagctactaatcctgctgatagtcagcacc 444

                                                                       
Query: 245 ggtgtgcaggacagcaccgcagacagctacccatcagcatgcaggacacccctccagtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtgtgcaggacagcaccgcagacagctacccatcagcatgcaggacacccctccagtgt 504

                                                                       
Query: 305 gtatctcggccctacaggcagacgctgtagggccctgagtgtttctccgcaggctggaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 gtatctcggccctacaggcagacgctgtagggccctgagtgtttctccgcaagctggaac 564

                    
Query: 365 taactattc 373
           |||||||||
Sbjct: 565 taactattc 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no072_d17.g1 MSMg01no072_d17.g1 CHROMAT_FILE:
MSMg01no072_d17.g1 PHD_FILE: MSMg01no072_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:54 2005
         (321 letters)



>mm_chr6_83620082_83620802
          Length = 721

 Score =  590 bits (305), Expect = e-173
 Identities = 317/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgggaacagcagctctctgtcgccctgtccttgccatgttccatcacctcttgatccg 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 521 catgggaacagcagctctctgtcgccttgtccttgccatgttccatcacctcttgatccg 462

                                                                       
Query: 61  agttctctgaagcctgaatccccatttccttgagtgagctaatccagagcagttcagggc 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ctttctctgaagcctgaatccccatttccttgagtgagctaatccagagcagttcagggc 402

                                                                       
Query: 121 tgcagatcttctgtttgagctgcctggctcagctcccctccctcctgccaccaggccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgcagatcttctgtttgagctgcctggctcagctcccctccctcctgccaccaggccttc 342

                                                                       
Query: 181 atatgcccaggccaccatagtcatctcggcctcctccgctcctctccatgtgctcccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atatgcccaggccaccatagtcatctcggcctcctccgctcctctccatgtgctcccctc 282

                                                                       
Query: 241 tggttatgatagtcttgtctactctaaacacctcttggctcaaagatttccttggagtgc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tggttatgatagccttgtctactctaaacacctcttggctcaaagatttccttggagtgc 222

                                
Query: 301 ttgttttcattcccagtgacc 321
           |||||||||||||||||||||
Sbjct: 221 ttgttttcattcccagtgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)