AAATTTGCGGCGCTAAACGACTCCTATATTCCGGACTCCGCGGAATTCAA
TGACCTTCTCATCAAGATTGAGGACAACCCAATGTTGCTCTAACTCAATG
AAAACTCTTAAGCATTTACTGAAAACTAATGAAGGTTCTACTGTATGCAC
AGCTCTGGATATGGTCCCAGGGCTTTAGGGGCAGGGCAAGTGGCAACAAA
TGACACATGCTTCTTACATTAAAGAGTTCTTAGGGATTTCATAAATTCAT
TCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTC
TGTATCCATTCCTCTGTTGAGGGTCATCTGGGTTCTTTCCAGCTTCTGGT
TATTATAAATAAGGCTGCTACTATGCCAGGGCCTAGCAAACAGAGAAGTG
GATGCTCACGGTCAGCTATTGAATGGACCACAGGGCCCCCAATGGAGGAA
CTAGAGAAAGCACCCAAGGAACTAAAGGGATCTGCAACCCTATAGGTGGA
ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCTT
ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGATGCCCATT
GGACTTTCAAACTTTATATGCCCCAGTATAGGTGAACGCCAGGGCCAATA
AGGGGGAGTGGGTGGCTATGTGGAGTGCCCACCTCTCCCTTCT

ATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCAGAAATACTTTGTTCAGTTCTGCGCCCCATTTTTTAATGGG
GTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGG
ATATTAGTCCCCTATCTGATTTAGTATAGGTAAAGATCCTTTCCCAATCT
GTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACT
TTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAG
CCATTGCTGTTCNGTTCTTGAATTTTTCCCCTGTGCCCATATCTTCAAGG
CTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTG
AAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATG
GATCTAAAACCACTTTGTTCTGTATATTCCCATAATCACTTAAGGCCATA
TCATCTCTAGGTTTCTTCTCATTTCATCGCAGAGCATTTATTTCTAATTC
ATTTCCTATCCCTAATGGGATCTATATCCGTTTGCTCACTATTACACCTT
TATACAGACTCTAAGTTTTGACCACAGATTGGTTGACCGTACTGATCTGT
GTGTGCCCTATGTCCATGGAAGACACAACTAACTCCTGAGA

Query= MSMg01no072_o15.b1 MSMg01no072_o15.b1 CHROMAT_FILE:
MSMg01no072_o15.b1 PHD_FILE: MSMg01no072_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:49 2005
         (582 letters)



>mm_chr6_110524488_110525469
          Length = 982

 Score =  692 bits (358), Expect = 0.0
 Identities = 361/362 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaggacaacccaatgttgctctaactcaatgaaaactcttaagcatttactgaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 attgaggacaacccaatgttgctctaactcaatgaaaactcttaagcatttactgaaaac 303

                                                                       
Query: 61  taatgaaggttctactgtatgcacagctctggatatggtcccagggctttaggggcaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taatgaaggttctactgtatgcacagctctggatatggtcccagggctttaggggcaggg 243

                                                                       
Query: 121 caagtggcaacaaatgacacatgcttcttacattaaagagttcttagggatttcataaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caagtggcaacaaatgacacatgcttcttacattaaagagttcttagggatttcataaat 183

                                                                       
Query: 181 tcattctttttaatagctgagtagtactccattgtgtaaatgtaccacattttctgtatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tcattctttttaatagctgagtagtactccattgtgtaaatgtaccacattttctgtatc 123

                                                                       
Query: 241 cattcctctgttgagggtcatctgggttctttccagcttctggttattataaataaggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cattcctctgttgagggtcatctgggttctttccagcttctggttattataaataaggct 63

                                                                       
Query: 301 gctactatgccagggcctagcaaacagagaagtggatgctcacggtcagctattgaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 62  gctactatgccagggcctagcaaacagagaagtggatgctcacagtcagctattgaatgg 3

             
Query: 361 ac 362
           ||
Sbjct: 2   ac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no072_o15.g1 MSMg01no072_o15.g1 CHROMAT_FILE:
MSMg01no072_o15.g1 PHD_FILE: MSMg01no072_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:49 2005
         (560 letters)



>mm_chr6_110375779_110376738
          Length = 960

 Score =  311 bits (161), Expect = 6e-89
 Identities = 170/173 (98%)
 Strand = Plus / Plus

                                                                       
Query: 388 taaaaccactttgttctgtatattcccataatcacttaaggccatatcatctctaggttt 447
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 taaaaccactttgttctctatattcccataatcacttaaggccatatcatctctaggttt 647

                                                                       
Query: 448 cttctcatttcatcgcagagcatttatttctaattcatttcctatccctaatgggatcta 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cttctcatttcatcgcagagcatttatttctaattcatttcctatccctaatgggatcta 707

                                                                
Query: 508 tatccgtttgctcactattacacctttatacagactctaagttttgaccacag 560
           ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 708 tatccgtttgcccactattacgcctttatacagactctaagttttgaccacag 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)