Query= MSMg01no073_f01.b1 MSMg01no073_f01.b1 CHROMAT_FILE:
MSMg01no073_f01.b1 PHD_FILE: MSMg01no073_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:20 2005
(494 letters)
>mm_chr6_50980010_50980903
Length = 894
Score = 820 bits (424), Expect = 0.0
Identities = 480/506 (94%), Gaps = 12/506 (2%)
Strand = Plus / Minus
Query: 1 gaatttgaagatgttaataaatgatggtgaatatggggtggaggccatgccacaaaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct: 782 gaatttgaagatgttaataaatgatggtgaatatggggtggaggccaggcaataaaaaca 723
Query: 61 aacatgaaaaagtacc------------tttttttttttttttggtttgatgatagctga 108
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 722 aacatgaaaaagtacctttttttttttttttttttttttttttggtttgatgatagctga 663
Query: 109 aagacagataaatgaccccattcaccttgagcctggctggtgagggtttcagaaatgtaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aagacagataaatgaccccattcaccttgagcctggctggtgagggtttcagaaatgtaa 603
Query: 169 ctttactccagacagttttaaaaggagtttgggactgagtataaatggccagggaagctt 228
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 602 ctttactccagacagttctaaaaggagtttgggactgagtataaatggctggggaagctt 543
Query: 229 cttggtgaattaataagcagaatgggctatgaggacattggcggcaggggaatgtaggaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cttggtgaattaataagcagaatgggctatgaggacattggcggcaggggaatgtaggaa 483
Query: 289 cagagtgtgatccacactggggcctgtggtccacaaaaatgctagtctagtttcaacctc 348
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 482 cagagcgtgatccacactggggcctgtggtccacaaaaatgctagtcgagtttcagcctt 423
Query: 349 ctgctagctcaagcagcagtccatatcagaatcctctaggttctctggcacaatgtctgc 408
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctgctagcccaagcagcagtccatatcagaatcctctaggttctctggcacaatgtctgc 363
Query: 409 aatagtcatcttgacatgaactatcaggtccggttgttttattgcgtctagtctgctgca 468
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 362 aacagtcatcttgacatgaactatcaggtccggttgttttattgcatctagtctgctgca 303
Query: 469 gctcaaatgtgttcctaaagcccagg 494
| ||||||||||||||||||||||||
Sbjct: 302 gttcaaatgtgttcctaaagcccagg 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_f01.g1 MSMg01no073_f01.g1 CHROMAT_FILE:
MSMg01no073_f01.g1 PHD_FILE: MSMg01no073_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:20 2005
(462 letters)
>mm_chr6_50830373_50831234
Length = 862
Score = 878 bits (454), Expect = 0.0
Identities = 457/458 (99%)
Strand = Plus / Plus
Query: 1 agatcctaagaacacacaggcttctttcccctctaagaggttgcagaagtgcagccacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatcctaagaacacacaggcttctttcccctctaagaggttgcagaagtgcagccacag 260
Query: 61 aggtgggagcagtttgtaaacaaagaccaccacacagatgcaagggttagcttggggaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgggagcagtttgtaaacaaagaccaccacacagatgcaagggttagcttggggaat 320
Query: 121 gaaaggggagaaggtctggcccctataaaggatcacctcccccacccctgtgaacttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaggggagaaggtctggcccctataaaggatcacctcccccacccctgtgaacttcaa 380
Query: 181 aggatggacaaggaaggcgggggcaggacaacggtagagcttggaatgttggcttttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatggacaaggaaggcgggggcaggacaacggtagagcttggaatgttggcttttcct 440
Query: 241 caaaggtacttcctctttgttgggaatcaaatccagagacgccaatgataatgactctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaggtacttcctctttgttgggaatcaaatccagagacgccaatgataatgactctca 500
Query: 301 ttttatggctgttttattattcaaggttggctcggtacagttcccctcaaaggcatatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttatggctgttttattattcaaggttggctcggtacagttcccctcaaaggcatatgg 560
Query: 361 atgaagatgaaaagtgccaagctaatatcttgaaggaggcaagttctgtaaccaagttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaagatgaaaagtgccaagctaatatcttgaaggaggcaagttctgtaaccaagttct 620
Query: 421 tcctgaacagatgctgcgctggcttgtttgaatgtctc 458
|||||||||||||||||||||||||||||| |||||||
Sbjct: 621 tcctgaacagatgctgcgctggcttgtttgcatgtctc 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
