BAC Information

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BAC

Clone NameMSMg01-074C20
Chromosome6 (Build37)
Map Location 9,701,382 - 9,701,769
singlet/doubletsinglet
Overlap genenone
Upstream geneIca1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074C20.T7 (MSMg01no074_c20.b1)MSMg01-074C20.TJ (MSMg01no074_c20.g1)
ACCAG297294AG297295
length696695
length of high quality
(start - end)
295 (69 - 363)388 (75 - 462)
definitionCHROMAT_FILE: MSMg01no074_c20.b1 PHD_FILE: MSMg01no074_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:28 2005CHROMAT_FILE: MSMg01no074_c20.g1 PHD_FILE: MSMg01no074_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGGTTTCCAAGAAAACTTCATGAAAAGAACATCAATAACTCAG
GCATTAAAATCAACTACAAAATCGGACCTTATGAAACTGAAGACTTTCTT
TAAGGCAAATGACACTGTTAATAAGACAATATGGCAGCCCTCAAAATGGA
AAAAGAGAATTCTCAACATAGAATTCTTGAATGGCCTAGAAGCACTTAAA
GAAATGTTCAATGCTTTAGTCATAGAGTAAATGCAAATCAAAAGGATTCT
GAGATTCAACCATACAGCCATCAGAATGGCTAAGATCAAAACCTCAAGCA
ACAGCACAATTTATGTAGGATGTCGAACATAGGGAACACTCCTCCATTAC
TTGAGGGAGTGTATACTTGTTCAAGCCCTCTGGAAATCAATTTGTTGGTT
TCTCAGGAAATTAGGAGTTGTTCCACCTCAACAACCAGCTTTACCCCTGC
TGGGCATATACCTAAATGATGCTCTACCATATCACAAATCCATTTGTTCA
ACAATGTCCATAGCAGCTTCATTCATAATAGCCCAAAACTGGAAACAATT
CATATGTCTCTCCACTGAAATATGGATAAAGAATATGCTGTTCATTTGCA
CAATAGAATTCTACTCACCTATGACAAATTAGGACATCAAGTATTT
TCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTTCTTTTGTTCTACAGTTCACAA
CTGGGTAATTTCTATGCTGACTACACACACACACACACACACACACACAC
ACACACACACACACAGAGTAACAGGCACATGTTCACTGGGCTGCCTAACT
TCACAGAAAACCATTTACCTATATCTGCTTTAGTGGCCTTCTAAACAGTC
ATCTTCTTCGCGGGATTCTTCTGCTTAGATGCTGCAGTCATATTATCTCT
GGTTCTAGATTTTGCACTAAAGTCATTTCTCCTCTTTATTTTAAGAGTCT
TTGTCTTATGCTTGATAAATATTTTTGCATTTGGATTCCTCTATTCTCAG
CTGAAGACTAGCGAAATCTCCTTACACAACACATCTCTACCTGTCTAGAA
AGCTCTCTCAGTGAGTATAGACCCCTCAAATCCTAACTCTTCCAATTTCC
CAGATAACTTCTTAGGATCTTACTAAGCTTAACTAAAATTCTGACTGACT
TTCAGTTCCATGTTCTAATGACCAAGAACTTTTTGAGAAAGCTGCCTTAC
AAAAGTTAGGATTGTATTAATAACATTTGATTCATCATTTTGCGAACCAC
CAATCTTTTACTACCTGCAAGCCGTCCATAAAACAAAGCACATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_c20.g1 MSMg01no074_c20.g1 CHROMAT_FILE:
MSMg01no074_c20.g1 PHD_FILE: MSMg01no074_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:28 2005
         (388 letters)



>mm_chr6_9701090_9701877
          Length = 788

 Score =  719 bits (372), Expect = 0.0
 Identities = 384/388 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttcttttgttctacagttcacaactgggtaatttctatgctgactacacacacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtttcttttgttctacagttcacaactgggtaatttctatgctgactacacacacacac 621

                                                                       
Query: 61  acacacacacacacacacacacacacacacagagtaacaggcacatgttcactgggctgc 120
           ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 620 acacacacacacacacacacacacacacacacagtaacaggcacgtgttcactgggctgc 561

                                                                       
Query: 121 ctaacttcacagaaaaccatttacctatatctgctttagtggccttctaaacagtcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctaacttcacagaaaaccatttacctatatctgctttagtggccttctaaacagtcatct 501

                                                                       
Query: 181 tcttcgcgggattcttctgcttagatgctgcagtcatattatctctggttctagattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttcgcgggattcttctgcttagatgctgcagtcatattatctctggttctagattttg 441

                                                                       
Query: 241 cactaaagtcatttctcctctttattttaagagtctttgtcttatgcttgataaatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cactaaagtcatttctcctctttattttaagagtctttgtcttatgcttgataaatattt 381

                                                                       
Query: 301 ttgcatttggattcctctattctcagctgaagactagcgaaatctccttacacaacacat 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 ttgcatttggattcctctattctcagctgaagactagtgaaatctccttacacaacacat 321

                                       
Query: 361 ctctacctgtctagaaagctctctcagt 388
           ||||| ||||||||||||||||||||||
Sbjct: 320 ctctaactgtctagaaagctctctcagt 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)