BAC Information

Click to search

BAC

Clone NameMSMg01-074D20
Chromosome6 (Build37)
Map Location 78,379,002 - 78,379,636
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1
Downstream geneReg3g, LOC621716, Ppia-ps6_789.1, LOC384440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074D20.T7 (MSMg01no074_d20.b1)MSMg01-074D20.TJ (MSMg01no074_d20.g1)
ACCAG297342AG297343
length734693
length of high quality
(start - end)
412 (46 - 457)633 (56 - 688)
definitionCHROMAT_FILE: MSMg01no074_d20.b1 PHD_FILE: MSMg01no074_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:33 2005CHROMAT_FILE: MSMg01no074_d20.g1 PHD_FILE: MSMg01no074_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACCTCTGAGCCCCATTTTTAAATGAGGTTATTTGATTT
CTGGAGTCCACCTTCTTGAGTTCCTTATATATATTGAATATTAGTCCTCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGTTTTGCAGTTTCATG
AGGTCCCATTTGTCGATTCTCGATCTTACAGCATAAGCCATTGCTGTTCT
ATTCAGGAATTTTCCCCTGTGACAATATCTTCGAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTCTATGTGGAGCTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAAAGTGGACA
GATTGTGCCTCTCTAAAATTGACGCACAGTACTAGAAAGGTCTCATCACA
TCAACTTAGACCTTCTCAGATTCTCGGCATTGAGTAGTGATTCAGTTCTT
CTAGATCCACACTATACTATTGAAGAGCAGACTGACGACTATAATGATGT
CATTCTCTTAATTTATGGATGAGATGGCTTGCTGATGACGTAACTGATGG
GGCTGTGCCTCAATGCTAGGAGGTGTAAACCCTGGTTAAAATATAGGATG
TCACCGATACTGGGTAATGTAACTGACTTCCAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTGGGTCTAGAAGAGTTAAGGAATCAGTCATAGAAAAGTTTGAGT
CCTGGAAGCCTATAATTAATGCTAAATAACAATCTTTACATTACTGAATC
AATGAATTTATAAAGAATGACCCAAATAAAATATACTGTCATACTTAATT
GACTCTATAAATATATAAAATTCTGAAGTATTAAGGGTTAGGATTAAAAA
AAAAAACAATACTTTTTCAGAGAATCAGCTGAATCCCAAACATTGATGAC
CATCACAGTACATTTAGATACAATTTGTCAAATCAATACAAAGGGAACAG
ATTCGGGTTATCAGTCTGAGTCATAGCAATGACTACAACACAAGAAAAAC
AAAAATACAAGCCTCACTTATATTACAGACAAATAGCTTGAAGACAAAAT
GATGGGAAATCTATAGTTCCTATATAACCATGAAAGCATCTACATAGCTC
TAGTGGAATGGTGTCACATAATCAGACCCTTAGTTCTTCGGAAACTGAGG
CAGGAGAATTGCAAGTTACAGGTCAGATTGTGTATATAAGCTCCAGGTCA
GCCTGGCATAAGTAGTCAGTTCTTGCCTGAATAAAAGCAAACACCCAAAA
TATCCTAGACACAATAGTGTTTTAAATGTATCTTGAAAGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_d20.g1 MSMg01no074_d20.g1 CHROMAT_FILE:
MSMg01no074_d20.g1 PHD_FILE: MSMg01no074_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:33 2005
         (633 letters)



>mm_chr6_78378802_78379836
          Length = 1035

 Score = 1208 bits (625), Expect = 0.0
 Identities = 632/635 (99%), Gaps = 2/635 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggtctagaagagttaaggaatcagtcatagaaaagtttgagtcctggaagcctataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggtctagaagagttaaggaatcagtcatagaaaagtttgagtcctggaagcctataa 260

                                                                       
Query: 61  ttaatgctaaataacaatctttacattactgaatcaatgaatttataaagaatgacccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatgctaaataacaatctttacattactgaatcaatgaatttataaagaatgacccaa 320

                                                                       
Query: 121 ataaaatatactgtcatacttaattgactctataaatatataaaattctgaagtattaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaatatactgtcatacttaattgactctataaatatataaaattctgaagtattaag 380

                                                                       
Query: 181 ggttaggattaaaaaaaaaaa--caatactttttcagagaatcagctgaatcccaaacat 238
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttaggattaaaaaaaaaaaaacaatactttttcagagaatcagctgaatcccaaacat 440

                                                                       
Query: 239 tgatgaccatcacagtacatttagatacaatttgtcaaatcaatacaaagggaacagatt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgaccatcacagtacatttagatacaatttgtcaaatcaatacaaagggaacagatt 500

                                                                       
Query: 299 cgggttatcagtctgagtcatagcaatgactacaacacaagaaaaacaaaaatacaagcc 358
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgggttatcagcctgagtcatagcaatgactacaacacaagaaaaacaaaaatacaagcc 560

                                                                       
Query: 359 tcacttatattacagacaaatagcttgaagacaaaatgatgggaaatctatagttcctat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacttatattacagacaaatagcttgaagacaaaatgatgggaaatctatagttcctat 620

                                                                       
Query: 419 ataaccatgaaagcatctacatagctctagtggaatggtgtcacataatcagacccttag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaccatgaaagcatctacatagctctagtggaatggtgtcacataatcagacccttag 680

                                                                       
Query: 479 ttcttcggaaactgaggcaggagaattgcaagttacaggtcagattgtgtatataagctc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcttcggaaactgaggcaggagaattgcaagttacaggtcagattgtgtatataagctc 740

                                                                       
Query: 539 caggtcagcctggcataagtagtcagttcttgcctgaataaaagcaaacacccaaaatat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggtcagcctggcataagtagtcagttcttgcctgaataaaagcaaacacccaaaatat 800

                                              
Query: 599 cctagacacaatagtgttttaaatgtatcttgaaa 633
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 cctagacacaatagtgttttaaatgtatcttgaaa 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1035
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1025
Effective search space:   638575
Effective search space used:   638575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)