BAC Information

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BAC

Clone NameMSMg01-074I03
Chromosome6 (Build37)
Map Location 109,418,827 - 109,419,088
singlet/doubletsinglet
Overlap genenone
Upstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074I03.T7 (MSMg01no074_i03.b1)MSMg01-074I03.TJ (MSMg01no074_i03.g1)
ACCAG297547AG297548
length683707
length of high quality
(start - end)
262 (72 - 333)149 (158 - 306)
definitionCHROMAT_FILE: MSMg01no074_i03.b1 PHD_FILE: MSMg01no074_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:53 2005CHROMAT_FILE: MSMg01no074_i03.g1 PHD_FILE: MSMg01no074_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGCTAATTGCTAAATTATATAATTGCCCAATCTAGGCACT
ACATTCTATATTTCCAGTAATTCTGGCTCAGGAAGGAGAATAATGCACAT
AAGTTAGAAGTCTGAATCAATTGGGCCCCTGAATTAAATACAATAAAGGA
AATAATTTGTCCTTTGTCGATAAATGTAATGGGCTGTGACTTATAAATCC
CCTGTGGGGAATAACTTTGTTTTATTGTTTATCTGCAGCGTGAAGATTCC
CTTGGAAGACTTTATACTATATGTCATTCAAGCAGATGAAACACACATAC
ACTACCTGAATTGTGTTGTAAAGAATAGCTTTTGGCAAAAGAAAATTCTA
CAGGTATGTATTGTATCATTGGCTGAAGCACTGGCTGCTTATACACATCA
ACTATTCAGGATATACCCTAATTTATGTAGAAATTCGAGCATCACTTATT
ACATGTCGCTGACCCATACAAAATTACTGACATCGTTGCACTATTTAATT
ATATTCCGCGACATCAGAATCTTATAAGATTTATAATCCTACCACACGTT
TGTTTCAGTATTGTATTAAAGCAAGCTCTACGCTTGTTTTTTGCCTCCAT
ATTGTCAAGCTACACTGTATCTTTCCGATTTCC
NAAAATCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGACAGAAGATCACAATTAGA
TAACCTTAGTGGTGCCATAGTCTTACTTTTATTTGCTAGAGAAGATATAA
CAAAGAACCATGAGGTGGGTGGTTTCAAACATATATATTTATTGCGTGAC
AGTTTTTGAGGCTAGAAGCCTTAAATAAAAGTATGTGTGGGGTCTTGCTG
CTGGTGGAGTGACTATCAAGGATATATTCTAGGTATCATTATTAGCCTCT
ACTGCATCCCTGACTACTTGCTGTGTTTTGAAAAATATATTCAAATTTGA
TTCTAAGTGTTTTTTTTGTTGCACCCCCCCGATGCCTTTTGCAAACAAGA
CCGTCATGGCCACTCTCCCTTCCTAAAATTATTAACGGTTTTCTATAGAT
GCCTACCTGCCGCCTCTTGTTCATTGATCTGCCCACATGCACGTTCTTGG
CTATGCCACTTCAGCTCTTCTGTTACGCCTTTATTTACACTGTTCTCTTT
GATTCTCCCCCAATGATCCTCTCTATTTATTTCTCGCCCCTCCCCCTCTT
TTTCTCCCCCCCTGATCCTCTTAACCATCTTTCCCTCTTCCGCCCTTCTA
TTTTTTCACTTTACCCCCCTTCTTCTCTAAAACCCTTACCCCTCTCTTTC
TTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_i03.b1 MSMg01no074_i03.b1 CHROMAT_FILE:
MSMg01no074_i03.b1 PHD_FILE: MSMg01no074_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:53 2005
         (262 letters)



>mm_chr6_109418627_109419288
          Length = 662

 Score =  476 bits (246), Expect = e-139
 Identities = 258/262 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattatataattgcccaatctaggcactacattctatatttccagtaattctggctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 462 aaattatataattgcccaatctaggcactacattctatatttccagtaattctgggtcag 403

                                                                       
Query: 61  gaaggagaataatgcacataagttagaagtctgaatcaattgggcccctgaattaaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaaggagaataatgcacataagttagaagtctgaatcaattgggcccctgaattaaatac 343

                                                                       
Query: 121 aataaaggaaataatttgtcctttgtcgataaatgtaatgggctgtgacttataaatccc 180
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 342 aataaaggaaataatttgtcctttgtcaataaatgtaatgggctgtgacttaaaaatccc 283

                                                                       
Query: 181 ctgtggggaataactttgttttattgtttatctgcagcgtgaagattcccttggaagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctgtggggaataactttgttttattgtttatctgcagcgtgaagattcccttggaagact 223

                                 
Query: 241 ttatactatatgtcattcaagc 262
           |||||| |||||||||||||||
Sbjct: 222 ttatacaatatgtcattcaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)