Query= MSMg01no074_p19.b1 MSMg01no074_p19.b1 CHROMAT_FILE:
MSMg01no074_p19.b1 PHD_FILE: MSMg01no074_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:32 2005
(570 letters)
>mm_chr6_116884572_116885541
Length = 970
Score = 861 bits (445), Expect = 0.0
Identities = 505/525 (96%)
Strand = Plus / Minus
Query: 5 gaattcacgtaagttctttttggagggcagggggttcactctttcaatcagggtaacttt 64
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcacataagttctttttggaaggcagggggttcactctttcaatcagggtaactta 466
Query: 65 ggaccatgttaacgtcaatattcaagaaaatctggaaatggtgcagtgctgtggctgtgc 124
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 465 ggaccatgttaatgtcaatattcaagaaaatctggaaatagtgcagtgctgtggctgtgc 406
Query: 125 tagtctgtttgggcagctgtaaagaattgtgagctcagatcacaggcactgtgatcatgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tagtctgtttgggcagctgtaaagaattgtgagctcagatcacaggcactgtgatcatgg 346
Query: 185 agatctgactgtggccttctcgagcccagcaatgtggctcacagcacaagcaggtactgc 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 345 agatctgactgtggccttctcgagcccagcaatgtggctcacagcacatgcaggtacagc 286
Query: 245 tgtatactatatacttctatatacttctttatagatgtctttttaaaagagatgttctat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgtatactatatacttctatatacttctttatagatgtctttttaaaagagatgttctat 226
Query: 305 tacacattacttatttatttagtgtgtatgtttttacgtgtgtgtgtaagtgctcatgca 364
||||| || |||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct: 225 tacacttttcttatttatttagtgtgtatgtttttacgtgtgtgtttaaatgttcatgca 166
Query: 365 catgcatgtacgtgtgagtgtgcatgtgtgtgtgcatgtgtgtttttatctgcatgtgtg 424
|||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 165 catgcatgtaggtgtgagcgtgcgtgtgtgtgtgcatgtgtgtttttatctgcatgtgtg 106
Query: 425 catgtgtatgtgtgcctgtgttcatgtatgaggtcaaaggataactaagaagcattggct 484
||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 105 catgtgtatgtgtgcatgtgttcatgtacaaggtcaaaggataactaggaagcattggct 46
Query: 485 ctcacatcatccagcttaggtcgccaggcttggtagcaggtgctg 529
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 45 ctcacatcatccagcttgggtcgccaggcttggtagcaggtgctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_p19.g1 MSMg01no074_p19.g1 CHROMAT_FILE:
MSMg01no074_p19.g1 PHD_FILE: MSMg01no074_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:32 2005
(615 letters)
>mm_chr6_116772609_116773624
Length = 1016
Score = 1122 bits (580), Expect = 0.0
Identities = 607/616 (98%), Gaps = 1/616 (0%)
Strand = Plus / Plus
Query: 1 tcatccaatcccaggcgaaggccgccaagttataccgcaataaggcacatgctaaacgac 60
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 201 tcatccaatcccgggcgaaggccgccaagttataccgcaataaggcaaatgctaaatgac 260
Query: 61 aaaaaatcactgatcttatctcagtgtgtgtgaggcagtcagaaccatcagtctctgagc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 aaaaaatcactgatcttatctcagtgtgtgtgaagcagtcagaaccatcagtctctgagc 320
Query: 121 gctatcctccattcttcaatcatttttagtcaggatgattttgttaaatttaattgatgt 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gctatcctccattcttcaatcatttttagtcaggataattttgttaaatttaattgatgt 380
Query: 181 aagatttgttctttggcccttccttcagcataggtagaacacggttagtgctcataccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagatttgttctttggcccttccttcagcataggtagaacacggttagtgctcataccta 440
Query: 241 gaaggctagtgatcaaacaaagagttttaaaagatagatagagattttgtgacttgaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggctagtgatcaaacaaagagttttaaaagatagatagagattttgtgacttgaaca 500
Query: 301 gttcaaattctctttcaggatacagctgaagatggagggggcca-cccatgtgagactta 359
||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 501 gttcaaattctctctcaggatacagctgaagatggaggggggaaacccatgtgagactta 560
Query: 360 ctgcactctacaagacagtgcctgcctccactgacttgagctgcctcttctgcatgctcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcactctacaagacagtgcctgcctccactgacttgagctgcctcttctgcatgctcc 620
Query: 420 acagagacctcctttcagaaacagatggaagaactgaagtgtcattattttctcaaaagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagagacctcctttcagaaacagatggaagaactgaagtgtcattattttctcaaaagc 680
Query: 480 gttgaaacaacttctaatgtagcacttacatcatagaagaatattatttaaaatgtatgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgaaacaacttctaatgtagcacttacatcatagaagaatattatttaaaatgtatgg 740
Query: 540 gaaagtgtacacgggttatatgcaaatacacaccacaccatgttaaatgagaagcacaag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaagtgtacacgggttatatgcaaatacacaccacaccatgttaaatgagaagcacaag 800
Query: 600 cgtcctgggactttgc 615
||||||||||||||||
Sbjct: 801 cgtcctgggactttgc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
