TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTAGAGTTTTCAGCAAAGAAGTAGGAGTTTAGTGTAAACTTTTCCT
ATTTGCATTAAGTAATTGGATACCTTGCCTGAGCTTAATGAAACAAATAC
CAGTTGGTGCTGCTCTACACCTCCAGCCCCAGCAACTTAGTTCTTTTCTT
TGCATATTCTCAATCAGGTGAGAGACTTAAGATAGACCAGCAAAATGAGT
TTCTAAACACCAGTCAAGTCTCTTATAATGAATATTATTGAATGTCCGTT
TTAAGTAAAATCAAAAAAAAAATTACTCATTACATTCAACTCACATATCT
GGTATAAAAATCCATTTCTCTATAACATAATCACCCAGCTTTATTGCCTT
CTCAAGAAGTTAAAGGTTTCAAGGAAGTGGAAAGGGAATTTTAAAAATAA
CTTTAGCTAAGCATTTTTTATATATCAAATTCCATCACACTCCATGAAGA
AAAGCATTATTCCCTCCACTTTGAACAAAAGAAAAACTCAAGGAATACAC
CAGAGGAAAAGAAACACAATGGCCCGATTTACAAAGCCATGTTTCTTAAA
CCCCCTGGAAAGCTCTCTCCCTCCTGGAGCCTGGGTATGCACCTGTAACC
CCAGCCACTGAGGTGTAGGGGCTCAAGAGTATAAAGCTCAAGGCCTTG

NNNNNNNCCCCCCCCNNNCCCCCTTTTCCCCCCCCCCCCTTTTTAATTAT
TAAAACACCTGCTAAAATGTGTAAAAATTAAAAAATACTGGGGGCGTTCG
CGCCCTTTTTAAAAAAAAAGCGTTTTCCTCCCCCCCCCTTTGTTTGGGGT
TTTTATTTCCCCGCCGTTATCTTAAATTCTCTCTCTATCCGTGCTTTTTT
TTCTCCTCCTTTTCCCCTTTTTTTGCTGTTTTTATCAATACACCTTCAAA
TTACACATTTTTTTTCTTTTTGTTTTTACTACACCTCTATCCGCCCCCGC
CGAGAGAAACACATAAAATATAAAAAAAAAAAAAACATAACAAATAAATC
TTTTAATCCCCATTCTATCTTATCCCCTTTTCTTACAAAAAAAAAAAAAA
TATTCACTTCCATCATTCTTCCTCATCTACTCACCTTCCCTGTCGGATCG
ATATAATACTATCTCTTCAAACAAATAACAAAATAAAACACTCCATATAA
CTCCTCTTCCCACTTCTACCTACATCTTTATTCTAAATAAACAATAAATA
TTTCTTCTTTTTTATCAAATTACAAAAAATCTTTGACTCTTCTATTCTTA
CCTCTCATAATCACATAATATTCACTAAACTATACGATACTTTACCCCCC
CCCATATTCTCCACTCTTACACTTCACTATAAAAAAAATAAAACTATACA
TATAACATAAAAAAATAAACAACAATTCACTATCCTTATTCATTATTGAA
TTAATATATTAATTTTTATACTCAAACACT

Query= MSMg01no074_p23.b1 MSMg01no074_p23.b1 CHROMAT_FILE:
MSMg01no074_p23.b1 PHD_FILE: MSMg01no074_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:33 2005
         (376 letters)



>mm_chr6_32923925_32924701
          Length = 777

 Score =  661 bits (342), Expect = 0.0
 Identities = 369/386 (95%), Gaps = 14/386 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctagagttttcagcaaagaagtaggagtttagtgtaaacttttcctatttgca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctagagttttcagcaaagaagtaggagtttagtgtaaacttttcctatttgca 264

                                                                       
Query: 65  ttaagtaattggataccttgcctgagcttaatgaaacaaataccagttggtgctgctcta 124
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 ttaagtaattggatagcttgcctgagcttaatgaaacaaataccagttggtgctgcccta 324

                                                                       
Query: 125 cacctccagccccagcaacttagttcttttctttgcatattctcaatcaggtgagagact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacctccagccccagcaacttagttcttttctttgcatattctcaatcaggtgagagact 384

                                                                       
Query: 185 taagatagaccagcaaaatgagtttctaaacaccagtcaagtctcttataatgaatatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taagatagaccagcaaaatgagtttctaaacaccagtcaagtctcttataatgaatatta 444

                                                                       
Query: 245 ttgaatgtccgttttaagtaaaatcaaaaaaaaaa-ttactcattacattcaactcacat 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 ttgaatgtccgttttaagtaaaatcaaaaaaaaaaattactcattacattcaactcacat 504

                                                                       
Query: 304 atctggtataaaaatccatttctctataacat-------------aatcacccagcttta 350
           |||||||||||||||||| |||||||||||||             |||||||||||||||
Sbjct: 505 atctggtataaaaatccagttctctataacatgatactagggtaaaatcacccagcttta 564

                                     
Query: 351 ttgccttctcaagaagttaaaggttt 376
           ||||||||||||||||||||||||||
Sbjct: 565 ttgccttctcaagaagttaaaggttt 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 777
Length adjustment: 9
Effective length of query: 367
Effective length of database: 768
Effective search space:   281856
Effective search space used:   281856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)