BAC Information

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BAC

Clone NameMSMg01-075L08
Chromosome6 (Build37)
Map Location 110,504,403 - 110,504,541
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075L08.T7 (MSMg01no075_l08.b1)MSMg01-075L08.TJ (MSMg01no075_l08.g1)
ACCAG298460AG298461
length688675
length of high quality
(start - end)
65 (222 - 286)139 (377 - 515)
definitionCHROMAT_FILE: MSMg01no075_l08.b1 PHD_FILE: MSMg01no075_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:26 2005CHROMAT_FILE: MSMg01no075_l08.g1 PHD_FILE: MSMg01no075_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGATGGGGGATCATAATTGCGGCGCTAATACGACTCCTATTTTCAGAGGA
TCCGCGGAATTCTGGAACTTTCCGCAATTGTTCAGTTAATTCTTAAATTG
AGCCAAAGGTTTATAAGAGATAAGATCGGGAAACATAAGAATGAATAACA
TACTGGATATTTTCATAGTGCTCTAAGGTGCTATGAAGGCTACAAGAAGA
AAACAAAACTCAAAGATAGCTAGTTTTAATCCGGCACAGCGTAGCAGTGA
TTGATTTGACAAGATATGTCTACTGGTGAAATAGTGGCACAAACATCATG
GAACTAACCAACTACTTTCTGGTTGGATTTATGGGCCACTCAACAAGAAC
ACACTTATGGCTGGCACCAGAATTGCGCCCCGAACCTATGACTAGACAGG
ACATAGCCCATAGGGTATAACACTAAAAAATTATTAATGATAAAAGGGAT
ATGTTAAAATTCAAAATAACCATTTCAACAGAGTATGTCTTAGAAGTATA
ACAAATAAAGGATTCTCAGAGAAATAACTACACAAAGTTCTGAATTTAGA
ATTTTTAAAAAGAGATAATGTGACTTAAAATTGTACTAGCCATGAATACT
TTTTCAGAATGTGTTCTACCTATGTAACACACCGAACACATGAACGCCCC
TCTTCTGTGATTCTCACCAGAATTACTTCTGAACCTAT
GATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGAAAGTATGAAATACAGCAAGCATGA
GAGGTTGGAAACTATTACGGCTTCTGTATGTGAAGTGAGACAAATCCAGG
GAATAATGTTATGTTGTTTCTGGAGGACTAAAAATGAGACCACTAATAGC
ATTCTGAATCAGTGGACACTGAATGTTAGAAAAAAGATCCGAGCTGAACA
CAAGTCTTGGAGTTATGCATTATAACTGATCCTATTGAATATGTGACTTT
CCCTAGGCATGGCTTAGAAGAGAACAATTCGAACACTCTGGGGCCAGAAG
AATTAACAAGCAACTCACGAATATATATGATACTGAGTACTAACTTCAGA
ACATCTCAAAATACTTTTCAAGTCTATATCTTTAACAGGCAAATCCTCCT
TTTTTGTGTGGATTTTATGGAGGTAATCATCTCATCCCATTCTGAAGTAA
CAGGAGAAAAAGATCTCACACAGTAGTGTAACGAGTATTAAAACATAAGA
AATATACCAAAGGGCTTGGAATATATCTCACAGGCTATGAGCACTTTGCT
GCTCTTACAGAGAACCAACACCCAGCACCCACAAAGTAGCCCACAATGCT
CCAAAACTACAGTTCCCGAGAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_l08.g1 MSMg01no075_l08.g1 CHROMAT_FILE:
MSMg01no075_l08.g1 PHD_FILE: MSMg01no075_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:26 2005
         (139 letters)



>mm_chr6_110504203_110504741
          Length = 539

 Score =  253 bits (131), Expect = 2e-72
 Identities = 137/139 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatactgagtactaacttcagaacatctcaaaatacttttcaagtctatatctttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatactgagtactaacttcagaacatctcaaaatacttttcaagtctatatctttaac 260

                                                                       
Query: 61  aggcaaatcctccttttttgtgtggattttatggaggtaatcatctcatcccattctgaa 120
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 aggcaaatcttccttttttgtgtggattttatggagggaatcatctcatcccattctgaa 320

                              
Query: 121 gtaacaggagaaaaagatc 139
           |||||||||||||||||||
Sbjct: 321 gtaacaggagaaaaagatc 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)