Query= MSMg01no076_b23.b1 MSMg01no076_b23.b1 CHROMAT_FILE:
MSMg01no076_b23.b1 PHD_FILE: MSMg01no076_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:59 2005
(553 letters)
>mm_chr6_36790772_36791726
Length = 955
Score = 1019 bits (527), Expect = 0.0
Identities = 545/551 (98%), Gaps = 2/551 (0%)
Strand = Plus / Plus
Query: 5 gaattcactacgtctacacccagtttgttcatttggaatg-catacctgtattatcctcc 63
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcactacgtcaagacccagtttgttcatttggaatgtcatacctgtattatcctcc 264
Query: 64 gcatggaatggtatcagatataaaagttcagaactgtcaaaaatgcatcaaactatcaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatggaatggtatcagatataaaagttcagaactgtcaaaaatgcatcaaactatcaaa 324
Query: 124 tctctgatttaaaaaaaaagtagggaagttgttaataaacaatagtttaattgttttaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctctgatttaaaaaaaaagtagggaagttgttaataaacaatagtttaattgttttaaa 384
Query: 184 ttactttatattgtaagccacatgtgtgtcttaacaaagagctgagaaacaagagagtcc 243
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 ttactttatattgtaagccacatgtgtgtcttaacaaagggctgagaaacaagagagtcc 444
Query: 244 cagttgctcccactaccaaaggcagccagctcagacaccactggcctccaggtactagaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagttgctcccactaccaaaggcagccagctcagacaccactggcctccaggtactagaa 504
Query: 304 cactggaagcagagagaaaacctatctcactgttttgttctgaatttcttcccttgcaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cactggaagcagagagaaaacctatctcactgttttgttctgaatttcttcccttgcaat 564
Query: 364 taccatgctggcaccagaagccaagggatttcccatggtgcttttcaagagcatttactt 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taccatgctggtaccagaagccaagggatttcccatggtgcttttcaagagcatttactt 624
Query: 424 agcttctaaagatccctgcacagaatttccttctgtgattaggttacagttaattctaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcttctaaagatccctgcacagaatttccttctgtgattaggttacagttaattctaag 684
Query: 484 aatctcaaatcacagcaatttttttt-aatattgaaagaatggtgagatttcctatatgg 542
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 685 aatctcaaatcacagcaatttttttttaatattgaaagaatggtgagatttcctatatgg 744
Query: 543 attttcttaag 553
|||||||||||
Sbjct: 745 attttcttaag 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 955
Length adjustment: 10
Effective length of query: 543
Effective length of database: 945
Effective search space: 513135
Effective search space used: 513135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_b23.g1 MSMg01no076_b23.g1 CHROMAT_FILE:
MSMg01no076_b23.g1 PHD_FILE: MSMg01no076_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:59 2005
(504 letters)
>mm_chr6_36969299_36970204
Length = 906
Score = 928 bits (480), Expect = 0.0
Identities = 499/506 (98%), Gaps = 2/506 (0%)
Strand = Plus / Minus
Query: 1 tttttcttctttcccttgtggtgtaggcagccttttctgatttcctacaaagaagttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tttttcttctttcccttgtggtgtaggcagccttttctgatttcctacaaagaagttcta 647
Query: 61 gagatctatccaaacacgtcaaagttgtcgtgagtattgactatataggttcatttcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gagatctatccaaacacgtcaaagttgtcgtgagtattgactatataggttcatttcatt 587
Query: 121 tgcatgtga--atgagtgtcactccccccacccccaatgccagttgatacgtagattaat 178
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tgcatgtgaatatgagtgtcactccccccacccccaatgccagttgatacgtagattaat 527
Query: 179 atatagacaaatatattaatccccgggctacatataatttgtcaatcatgtagctcattc 238
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 526 atatagacaaatatattaatccctgggctacatataatttgtcaatcatgtagctcattc 467
Query: 239 aaccataaacatgcttcctctccatgtgtcagtctctgtcttagttgctggagtgaaata 298
|||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 466 aaccataaacatgcatcctctctatgtgtcagtctctgttttagttgctggagtgaaata 407
Query: 299 aagactagttttactcctaaagaaataatatgctgggattatagtcctatactaagtcca 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 406 aagactagttttactcctaaagaaataatatgctgggattatagtcctgtactaagtcca 347
Query: 359 gcaaaatgtttaaaaaacacagagctacttttatataatataaaaacaagaggaaatgat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gcaaaatgtttaaaaaacacagagctacttttatataatataaaaacaagaggaaatgat 287
Query: 419 ccttgaaaagaaaacaactaaggatcgtaatagaataatatttagtagggcactggtaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccttgaaaagaaaacaactaaggatcgtaatagaataatatttagtagggcactggtaat 227
Query: 479 gttaacaatgttaataaactagaata 504
||||||||||||||||||||||||||
Sbjct: 226 gttaacaatgttaataaactagaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 906
Length adjustment: 10
Effective length of query: 494
Effective length of database: 896
Effective search space: 442624
Effective search space used: 442624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
