BAC Information

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BAC

Clone NameMSMg01-076F08
Chromosome6 (Build37)
Map Location 137,922,283 - 137,922,656
singlet/doubletsinglet
Overlap genenone
Upstream geneRerg, Ptpro, Eps8, Strap, Dera
Downstream gene9830102E05Rik, Mgst1, Lmo3, Igbp1b, EG668196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076F08.T7 (MSMg01no076_f08.b1)MSMg01-076F08.TJ (MSMg01no076_f08.g1)
ACCAG298936AG298937
length700728
length of high quality
(start - end)
392 (66 - 457)68 (74 - 141)
definitionCHROMAT_FILE: MSMg01no076_f08.b1 PHD_FILE: MSMg01no076_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:16 2005CHROMAT_FILE: MSMg01no076_f08.g1 PHD_FILE: MSMg01no076_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATAATTTGCGGCGCTATACGACTCCTATTTCAAGAAGACCGCGGAAT
TCATCAGATCGCCAACACTTCCGTCCTGAAAGTTTGGTATGGCTGTTCTC
AGAAAGCCATGAAAAATGGACCCAGCTGGACATTAGAGGCTTCTCAGCCA
TTCCTAGTCTTCACTGTGCTGAGTGTGCACTGGAGACTTTCCTGCAGTGG
TGAGTGAGGCGCTCTCTTCCTTTCCAAGTCACACTCACACACGCACTCAC
TCACTTACACATATACATGCAGATACACAAACAACTGAAAAAAATAAATC
ATTAAAAATAATAACCTCTGGCTTCCACATAAGCATGGTGGAATGGTCAC
TGAGGAATCTGCACTGTGAGCAGTGGCTTGTTAGTTATATAACTTGAAAT
TTACATATGATGATCAACCTGATTGCCTCTCAGGTCATCTCAAAGCACTC
TCCCAGGAACTTAAATGTGCGCAAAAAAAAAAAAAAAGTTCTTAAGAAAC
TAACTGAAAAATGTATGTGCCATTTACAAATTATGTTGCCTCCCTGCCTT
TTGGTCTATATAAATGATGTCTAGTTGGCCATCATAATCCTCTGAAAGAC
AATGTTGACGATGATACCCACGGACGAACACGTCATGAGGACAGTCAGTC
CCGCCTAGGTGTGTTCGTCAGGTGCACCGCTGTCAAGATCCCGCTACAAC

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGGTCCTGTGAAGGCTCGAAGCCCC
AGTGTAGAGAGATGCCAGGCCGGTGAGGTGGGAGGGGAACATCGGCATAG
AAGCAGGGGTAGGGCTGTGGCGGAGCCCCCCCCCCCTTCTCCCCCTTTTC
CTTCTCCCCTTCTTTCCCCTCTCTCCCTTCTCTCCTCCTTTTTTTCTCCT
CTTTTTTTTCCCTTCCGTCCCTTCCTCCTTCCCCCCCCTCTCTCTTCTTC
CTTCCCTCCTCTCTCCTTCTTCTTCTTCTCTTTCCCTTCTTCCCTCCCTT
CTTCCTCCTTCCTCCCCCTCCCTCCTTCCCTTTTCCCCCCTCCTTTTTTT
CTCTTCCCCTCTTCGTGTCCCCCTCCCTTCCCCCTTTTCCTTTTCCTTCC
CTTCCCTTCTTCCCCTTCTTCTTCCCCTCCCTCCTTTCTTCCTCCTTTCC
TTCCCCCCTTTTCCCCTTCCCCCTCTCTCTTTCCCTTTTCTTTCCCCCCC
CCTTTTCCCCTTCCTTCCTTTTCCTCCCCTTCCCCCCCTTCCCCCCCCCC
TCCTCTCCTTTTCTCTCTTCCCTTTCCCTTTCCTTTTTCTTCTTCTTCTT
TCCCCCCCTCTTCCTTTTTTTCCCCTTTTCCTGTCTTTCTTCCCCCCTCC
CCTCCTTCCCCCCCTTTCCCTCCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_f08.b1 MSMg01no076_f08.b1 CHROMAT_FILE:
MSMg01no076_f08.b1 PHD_FILE: MSMg01no076_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:16 2005
         (392 letters)



>mm_chr6_137921865_137922656
          Length = 792

 Score =  716 bits (370), Expect = 0.0
 Identities = 373/374 (99%)
 Strand = Plus / Minus

                                                                       
Query: 19  ttggtatggctgttctcagaaagccatgaaaaatggacccagctggacattagaggcttc 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttggtatggctgttctcagaaagccatgaaaaatggacccagctggacattagaggcttc 733

                                                                       
Query: 79  tcagccattcctagtcttcactgtgctgagtgtgcactggagactttcctgcagtggtga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcagccattcctagtcttcactgtgctgagtgtgcactggagactttcctgcagtggtga 673

                                                                       
Query: 139 gtgaggcgctctcttcctttccaagtcacactcacacacgcactcactcacttacacata 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtgaggcgctctcttcctttccaagtcacactcacacacgcactcactcacttacacata 613

                                                                       
Query: 199 tacatgcagatacacaaacaactgaaaaaaataaatcattaaaaataataacctctggct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tacatgcagatacacaaacaactgaaaaaaataaatcattaaaaataataacctctggct 553

                                                                       
Query: 259 tccacataagcatggtggaatggtcactgaggaatctgcactgtgagcagtggcttgtta 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 552 tccacataagcatggtggaatggtcactgaggaatctgcactgtgagcagtgggttgtta 493

                                                                       
Query: 319 gttatataacttgaaatttacatatgatgatcaacctgattgcctctcaggtcatctcaa 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gttatataacttgaaatttacatatgatgatcaacctgattgcctctcaggtcatctcaa 433

                         
Query: 379 agcactctcccagg 392
           ||||||||||||||
Sbjct: 432 agcactctcccagg 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)