BAC Information

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BAC

Clone NameMSMg01-078D15
Chromosome6 (Build37)
Map Location 113,489,718 - 113,489,942
singlet/doubletsinglet
Overlap geneFancd2
Upstream geneLOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111
Downstream gene4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078D15.T7 (MSMg01no078_d15.b1)MSMg01-078D15.TJ (MSMg01no078_d15.g1)
ACCAG299612AG299613
length705687
length of high quality
(start - end)
228 (76 - 303)174 (71 - 244)
definitionCHROMAT_FILE: MSMg01no078_d15.b1 PHD_FILE: MSMg01no078_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:29 2005CHROMAT_FILE: MSMg01no078_d15.g1 PHD_FILE: MSMg01no078_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAAT
TCTCAGATCTCACACAGATAATACACCATATACATAAAATAATAAATATT
TTTAAAAAAACAACAACTGTGTCAGAAAGGAAAAAGACCTGCCTGATTAA
TAATGACATATAAAGCCTCAAGTATAGAAACATCAAATATTTGAGTTTCA
TTAGCAAAGACAGAAACTTAAAATAAAAAATAGTTCTGGGCGCGGTAGCA
CTTGCCTTTAATTCCAGTACTAAGGAGGCAGAAGCATGTGGATTTTTGAG
CTCGAGGCCAGGTTGGTCTATAGAGTGAGCTCCATGACATCCAGTGCTAC
ACTATGAAACCCTGCCCTGAATAAACATAACTTATACATCAATTTATTTA
ATTTAACTTCCCCCCCCAAAAAAATTCAATGCAAATAAATCTAAAATTAC
ACGGTCTGCTTTGCTTGCTGGATAGATGTTTCCTCAGTTAAGTTATATGT
TTGCTCTTTTCTGATATTTTGACTTTCAATCCTCTTCACCTTCACTCTTG
ATTTGACGTCTTCTTTCTTGTAATGATTCTGCACTTATATAATTTTTTTT
AACAATTCGAAATAAAATTATATAAAACTCCTCTAATTTATTCTTCACAT
TTACGTACCAGATACCCCATTTGTCCTCCGTCTTTTATCCCCCTCCCTGC
ATATT
CCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTTTTAATAGTGAATTAGAAATAGCTTT
GTTAGCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCA
GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGG
TCCCGGACAGCCAGGGCTATACAGAGAAACCCTGGTCTCGAAAAATCAAA
ATAAACAAAAAAGAAAAAGAAAGAAATAGCTTTGTTTTACAAAACATGTT
TGCAACATGACTTTTCTAAATATATTCACTTCATAAACATTTTCTACATG
GCAGAGCCATGAACTACATACCTTTTACTTCATTGAGAACACTGAACAGA
TACATTTTCACCCCCCTTCTGCAGCCGCTGCACCCATCCTCCCAAGAGCT
GAATAGAGCAGCTCTGTTCCTCCCCAGGGAGAAGAGCAGGGTTATCTTAC
GAGGATACTGAGCTACCACCCACCAAGCGATTGACTTAACTAGCAGCATA
ACCTAACACGAGACTGTTTCTCATGCTTCTTCTCTTAGCTATATATAACA
CACTCATCTCTGAGTCTCCCTTAAAATAAATATGTCCGGCGATGCCTATC
CCCTAATTGCAAAGCACGTTCCTTCTCTATTTACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_d15.b1 MSMg01no078_d15.b1 CHROMAT_FILE:
MSMg01no078_d15.b1 PHD_FILE: MSMg01no078_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:29 2005
         (228 letters)



>mm_chr6_113489518_113490145
          Length = 628

 Score =  427 bits (221), Expect = e-124
 Identities = 224/225 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatatacataaaataataaatatttttaaaaaaacaacaactgtgtcagaaaggaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatatacataaaataataaatatttttaaaaaaacaacaactgtgtcagaaaggaaaaa 260

                                                                       
Query: 61  gacctgcctgattaataatgacatataaagcctcaagtatagaaacatcaaatatttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacctgcctgattaataatgacatataaagcctcaagtatagaaacatcaaatatttgag 320

                                                                       
Query: 121 tttcattagcaaagacagaaacttaaaataaaaaatagttctgggcgcggtagcacttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tttcattagcaaagacagaaacttaaaataaaaaatagttctgggcgtggtagcacttgc 380

                                                        
Query: 181 ctttaattccagtactaaggaggcagaagcatgtggatttttgag 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttaattccagtactaaggaggcagaagcatgtggatttttgag 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)