Query= MSMg01no078_f05.b1 MSMg01no078_f05.b1 CHROMAT_FILE:
MSMg01no078_f05.b1 PHD_FILE: MSMg01no078_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:37 2005
(487 letters)
>mm_chr6_102067539_102068425
Length = 887
Score = 895 bits (463), Expect = 0.0
Identities = 478/483 (98%)
Strand = Plus / Plus
Query: 5 gaattctttcagaaccattcctttgtcagttatcacaaacttcatggcattatttacatt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcagaatcattcctttgtcagttatcacaaacttcatggcattatttacatt 264
Query: 65 catgaaactaagcatttaagttaagaaagagaatggaaaaaggtcacctttagaaagtgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgaaactaagcatttaagttaagaaagagaatggaaaaaggtcacctttagaaagtgt 324
Query: 125 tcgtgcatgaacttgcatgtctggggtgcccaaagtttggtctctgaagcctgcagaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcgtgcatgaacttgcatgtctggggtgcccaaagtttggtctctgaagcctgcagaaac 384
Query: 185 attatttttcagactgcatgcaacagctgagaaacacagcaacccagtgagcagcagctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attatttttcagactgcatgcaacagctgagaaacacagcaacccagtgagcagcagctt 444
Query: 245 ctgttggagtgaaatacttgtatttgaaaatcatcagtcccctggatgctcagttcattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgttggagtgaaatacttgtatttgaaaatcatcagtcccctggatgctcagttcattt 504
Query: 305 tctaactgtaaattatttagaaaaaggcatcacctctggtattctaatacatcccaggca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctaactgtaaattatttagaaaaaggcatcacctctggtattctaatacatcccaggca 564
Query: 365 ctatttctcatcatatttatatgagaatgtgaaaatctctgttttcacccccctttggag 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 ctatttctcatcatatttatatgagaatgtgaaaatctctgtttccacccccctttggag 624
Query: 425 ccaaaataaaatacagtaacactgctgagaatttgtatattaaagcaccacagttatgtt 484
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 625 ccaaaataaaatacagcaacactgctgagaatttgtatattaaagcaccagaattatgtt 684
Query: 485 tcc 487
|||
Sbjct: 685 tcc 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_f05.g1 MSMg01no078_f05.g1 CHROMAT_FILE:
MSMg01no078_f05.g1 PHD_FILE: MSMg01no078_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:37 2005
(418 letters)
>mm_chr6_102185854_102186675
Length = 822
Score = 750 bits (388), Expect = 0.0
Identities = 412/422 (97%), Gaps = 4/422 (0%)
Strand = Plus / Minus
Query: 1 aggaggttgtgatgacacagataagacttgtgctgccttaagt----caaaatcctagta 56
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 622 aggaggttgtgatgacacagataagacttgtgctgccttaagtcagacaaaatcctagta 563
Query: 57 aggagaggggatctaagcacgaagtcccacccctcaccaagaagctcttggccagtcatt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aggagaggggatctaagcacgaagtcccacccctcaccaagaagctcttggccagtcatt 503
Query: 117 tttctgtaagagtgggcactctggtaaggtgaccattctctccacggtaagactgtctgt 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 502 tttctgtaagagtgggcactctggtaaggtgaccattctctccacggtaagactatctgt 443
Query: 177 ctaaagatatatggacagcacaagttggactttatggatgacagagagaggagcaaggga 236
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 ctaaagatatatggacagcacaagttggactttatgggtgacagagagaggagcaaggga 383
Query: 237 gctgggtagccaaaaatggggtatgacctgggaaagtgctagggagaaggactgaaaatg 296
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 382 gctgggtagccaaaaatggggtgtgacctgggaaagtgctagggagaaggactgaaaatg 323
Query: 297 attaaaacatggcatgtgaaattatcaagaaaatagtaaaaatatcgcgaaggaaaatgt 356
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 322 attaaaacatggcatgtgaaattatcaagaaaatagtaaaaatattgtgaaggaaaatgt 263
Query: 357 ataagtatttagtagacaattataaaaaagggggagaacaacaaaaggaaacattcaagt 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agaagtatttagtagacaattataaaaaagggggagaacaacaaaaggaaacattcaagt 203
Query: 417 aa 418
||
Sbjct: 202 aa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 822
Length adjustment: 9
Effective length of query: 409
Effective length of database: 813
Effective search space: 332517
Effective search space used: 332517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
