Query= MSMg01no078_h04.b1 MSMg01no078_h04.b1 CHROMAT_FILE:
MSMg01no078_h04.b1 PHD_FILE: MSMg01no078_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:46 2005
(269 letters)
>mm_chr6_53457104_53457773
Length = 670
Score = 491 bits (254), Expect = e-143
Identities = 263/266 (98%), Gaps = 1/266 (0%)
Strand = Plus / Plus
Query: 5 gaattcaacttcatccatttaaaagactgataaattcatgccagcacatgatctcacccc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacttcattcatttaaaagactgataaattcatgccagcacatgatctcacccc 264
Query: 65 cttgagta-cacaatgtgtctacgctggactgtgaagtcaacctctagatttgagtgttc 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgagtaacacaatgtgtctacgctggactgtgaagtcaacctctagatttgagtgttc 324
Query: 124 tatgtgaccctggaaccacacctgggcagcagagtggtgtcatcataccatatgtgcatt 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 tatgtgaccctggaaccacacctgggcagcagagtggtgtcatcataccacatgtgcatt 384
Query: 184 ccaatgtgtgagtttgtgttttaaggccaagatgtctcctgagatgaaaagaaacacaac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaatgtgtgagtttgtgttttaaggccaagatgtctcctgagatgaaaagaaacacaac 444
Query: 244 tgactgagttattgatttaattcaag 269
||||||||||||||||||||||||||
Sbjct: 445 tgactgagttattgatttaattcaag 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 670
Length adjustment: 9
Effective length of query: 260
Effective length of database: 661
Effective search space: 171860
Effective search space used: 171860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no078_h04.g1 MSMg01no078_h04.g1 CHROMAT_FILE:
MSMg01no078_h04.g1 PHD_FILE: MSMg01no078_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:46 2005
(320 letters)
>mm_chr6_53598082_53598801
Length = 720
Score = 588 bits (304), Expect = e-172
Identities = 316/320 (98%)
Strand = Plus / Minus
Query: 1 atgtcaggactttatgggaggggctctcatgctccccagctttccccccccctctctcct 60
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct: 520 atgtcaggactttatggaaggggctctcatgctccccagctttccccctctctctctcct 461
Query: 61 aggtgctctatgaaacctacctgtgatatactgggggcagctagtctggtatacatagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aggtgctctatgaaacctacctgtgatatactgggggcagctagtctggtatacatagtc 401
Query: 121 acagtgacaataaagagggggcagcaagatctgaaaaggggttaggtgatgggaatgcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 acagtgacaataaagagggggcagcaagatctgaaaaggggttaggtgatgggaatgcac 341
Query: 181 agctcaagggtgacatcatttgactctgtaaaagttgtcatgagaggcaagcaaaacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agctcaagggtgacatcatttgactctgtaaaagttgtcatgagaggcaagcaaaacaga 281
Query: 241 gttcctgatggctttcttagaagttttctccctgcatggattggacctggccttgtctta 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gttccagatggctttcttagaagttttctccctgcatggattggacctggccttgtctta 221
Query: 301 ttaaagagaaaccctacaag 320
||||||||||||||||||||
Sbjct: 220 ttaaagagaaaccctacaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
