Query= MSMg01no079_a17.b1 MSMg01no079_a17.b1 CHROMAT_FILE:
MSMg01no079_a17.b1 PHD_FILE: MSMg01no079_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:33 2005
(507 letters)
>mm_chr6_96970576_96971482
Length = 907
Score = 930 bits (481), Expect = 0.0
Identities = 493/497 (99%)
Strand = Plus / Minus
Query: 8 gaattctttataacctggtaggatgaattacgttgaaaagactttgtgtgtgtgtgtgtg 67
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattctttataacttggtaggatgaattacgttgaaaagactttgtgtgtgtgtgtgtg 500
Query: 68 tttcccattaacatttttttcataaaggagccttgaagtggtctagtgtcattccaggtg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttcccattaacatttttttcataaaggagccttgaagtggtctagtgtcattccaggtg 440
Query: 128 tcagccacctgggacggacggtctcagatgtccttttttgtccaaaggttagggaaatga 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcagccacctgggacggacggtctcagatgtccttttttgtccaaaggttagggaaatga 380
Query: 188 agactgtgaaactgtgtatcttagatgatttgggtctctctgccaaaagctgctgctgag 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agactgtgaaactgtgtatcttagatgatttgggtctctctgccaaaagctgctgctgag 320
Query: 248 cacatttctattttaaatttgtattgtgctgggcttgggagattgctcagttgatcagga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacatttctattttaaatttgtattgtgctgggcttgggagattgctcagttgatcagga 260
Query: 308 agggacttgaaatagatctctagaacccacactacaaaaataaaaagctccaccaggtga 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agggacttgaaatagatctctagaacccacactacaaaaataaaaagctccaccaggtga 200
Query: 368 tgatggtgtatgcctttagtcccagaacataggaagcagagacagactgatctctgtgag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgatggtgtatgcctttagtcccagaacataggaagcagagacagactgatctctgtgag 140
Query: 428 ttcgaggcctgcctgctttactgaggagggtgtttagcgtcagggccgccataactatac 487
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct: 139 ttcgaggcctgcctgctttacagaggagggtgtttagcgtcagggccgccatagctacac 80
Query: 488 aggaaaaccctgtctca 504
|||||||||||||||||
Sbjct: 79 aggaaaaccctgtctca 63
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_a17.g1 MSMg01no079_a17.g1 CHROMAT_FILE:
MSMg01no079_a17.g1 PHD_FILE: MSMg01no079_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:33 2005
(524 letters)
>mm_chr6_96807659_96808581
Length = 923
Score = 928 bits (480), Expect = 0.0
Identities = 513/526 (97%), Gaps = 5/526 (0%)
Strand = Plus / Plus
Query: 1 tgtgggctacttaaaaatccaaattaaatcaatacatataagcaca--gataccaacaat 58
||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgtggactacttaaaaatccaagttaaatcaatacatataagcacacagataccaacaat 260
Query: 59 ccaatactgttggaagaaactaggtggacctaaaaagttaaacaaagcacttactgatac 118
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ccaatactgttggaagaaactaggtggacctaaaaagttaaacaaatcacttactgatac 320
Query: 119 tgcaatctagaccaaaggctacagcctatcgccaaaatgtatagatataccaaaaatgca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaatctagaccaaaggctacagcctatcgccaaaatgtatagatataccaaaaatgca 380
Query: 179 ctaaatattaaaattactccaagggtgaaagccaaagatgggggtttgggtatttatata 238
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 381 ctaaatattaaaattactccaagggtgaaagccaaagatgggggtttgggtgtttatgta 440
Query: 239 ctgcctttagagaggtggggagatatctaggggtattcatatactttctttgtgggtgag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcctttagagaggtggggagatatctaggggtattcatatactttctttgtgggtgag 500
Query: 299 atttggggtgttcatatatttccttcaccaagatggcaggcacaacaggaatcatcatga 358
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 501 atttggggtgttcatatatttcctttaccaagatggcagggacaacaggaatcat---ga 557
Query: 359 tgtcagtagttttaaagtgccatcaaaagtgctgaatcatgcaaaacattatatataaaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgtcagtagttttaaagtgccatcaaaagtgctgaatcatgcaaaacattatatataaaa 617
Query: 419 cttctaatccaaagatgtgaggctagacaggatgtaaaaatagtccatattatgattcac 478
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cttctaatccaaagatgcgaggctagacaggatgtaaaaatagtccatattatgattcac 677
Query: 479 tgcttcctttagaagaagttacaagcccacagagacaaaggtagtt 524
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgcttcctttagaagaagttacaagcccacagagacaaaggtagtt 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 923
Length adjustment: 10
Effective length of query: 514
Effective length of database: 913
Effective search space: 469282
Effective search space used: 469282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
