BAC Information

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BAC

Clone NameMSMg01-079F23
Chromosome6 (Build37)
Map Location 133,045,437 - 133,046,102
singlet/doubletsinglet
Overlap geneTas2r141-ps4
Upstream geneEG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002
Downstream gene2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079F23.T7 (MSMg01no079_f23.b1)MSMg01-079F23.TJ (MSMg01no079_f23.g1)
ACCAG300467AG300468
length733727
length of high quality
(start - end)		695 (35 - 729)595 (63 - 657)
definitionCHROMAT_FILE: MSMg01no079_f23.b1 PHD_FILE: MSMg01no079_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:59 2005CHROMAT_FILE: MSMg01no079_f23.g1 PHD_FILE: MSMg01no079_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAAGA
ATCAACTACATGTGCTTCAGAAGACTGTTATTAACAATATTTAGCACTGT
AGTAGAAACTGGAGCATCTCTTGAAAACAATGGTGTCCTATATTACATAT
TATTAACTACTTTATGTGTGTAATTCATAGTGGGAAGTTTAGGCAATGCA
TTCATAGTTCTGGCGAACATCATGGACTGGGAGAAGAAAAGAAAGAGAAA
AGAAGAGGAGAAAGCTATCTTTTATAGATCAGATCTTCACTGCTCTGGCA
ATTTCCAGAATTGGTTTCCTCTGCTCAATAATTACAAGTGTATTGGTATA
TGAACTGTATCCAGCTTTAATAATGACTAAAAGACTGGTGAGCAAAATTA
ATACATCTTGGATAGTTACCAATCATTTCAGCATCTGGCTTGCTACAAGT
CTCAGAGTCTTTTATTTTCTCAAAATAGGCAATTATTTCAAACGCTATGT
TTCCCTTAAATTGAGAGTAAAACAAGTGGTATCTGTGACATTGCTGGCAT
CTTTGCTTATCTTCTTTTCAAATATTTTAATCGTANACAGATGTATTGAT
GTTTGAATTGATGGACATGAAGCTAATATATCCTACAATGCTATCTTANA
TACTGCTACTCATATTTCTAGGCTTATTATACTCATCAACACTATGTTCA
CACTTATACCATTCACTGTATCTCTGACAATAT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTAGGTTTTTTTATATGTTCCTAAGCATCTCTTTTTT
AGGTTGGGGAAATTTTCTTCTATAGTTTTGTTGAAGATATTTACTGGCCC
TTTAAGTTGGAAATCTTCCTTCTCATCTATAACTATTGTCCTTAGGTTTG
GTCTTCTTATTGTGTCCTGGATTTCCTGGATTTTTGGGGTTAGGATCTTT
TTGCATTTCACATTTTCTTTGCTGTGTCAATGTTTTCTATGGTATCTTCT
GCCCCTGAGATTCTCTCTTCTATCTCTTTTATTCTGTTTGTGATACTTGC
ATCTATGGCTCCTGACTTCTTACCTATGTTTTCTCTTTCCAGAGTTGTCT
CGCTTTATGATTTCCTTTTTTTTTTCTTTTTATACTTTTTTATTTTTTTA
TAATATTTTTATTAGATATTTTCTTTTTATACATTTTAAATGCTATCCTG
AAAATCCCCTATACCCTCCCACTGCCCTGCTCCCCTATCCACCCACTCCC
ACTTCTTGGCCCTGGCCTTCCCCTGGACAGGGGCATATAAAGTTTGCAAT
ACAAAGGGGCTTCTCTTCCCAGTAATGGCCAACTAGGCCATCTTCTGCTT
CATATGCAGCTAGAGACATGAACTCTGGGGGGACTGGTTAGTTCATAATT
GTGTCCACCTATAGGGTTGCAGACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_f23.b1 MSMg01no079_f23.b1 CHROMAT_FILE:
MSMg01no079_f23.b1 PHD_FILE: MSMg01no079_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:59 2005
         (695 letters)



>mm_chr6_133045008_133046102
          Length = 1095

 Score = 1208 bits (625), Expect = 0.0
 Identities = 656/667 (98%), Gaps = 3/667 (0%)
 Strand = Plus / Minus

                                                                        
Query: 31   cttcagaagactgttattaac-aatatttagcactgtagtagaaactggagcatctcttg 89
            ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 cttcagaagactgttattagcaaatatttagcactgtagtagaaactggagcatctcttg 1036

                                                                        
Query: 90   aaaacaatggtgtcctatattacatattattaactactttatgtgtgtaattcatagtgg 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 aaaacaatggtgtcctatattacatattattaactactttatgtgtgtaattcatagtgg 976

                                                                        
Query: 150  gaagtttaggcaatgcattcatagttctggcgaacatcatggactgggagaagaaaagaa 209
            |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 975  gaagtttaggcaatgcattcatagttctggtgaacatcatggactaggagaagaaaagaa 916

                                                                        
Query: 210  agagaaaagaagaggagaaagctatcttttatagatcagatcttcactgctctggcaatt 269
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  agagaaaagaagagaagaaagctatcttttatagatcagatcttcactgctctggcaatt 856

                                                                        
Query: 270  tccagaattggtttcctctgctcaataattacaagtgtattggtatatgaactgtatcca 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  tccagaattggtttcctctgctcaataattacaagtgtattggtatatgaactgtatcca 796

                                                                        
Query: 330  gctttaataatgactaaaagactggtgagcaaaattaatacatcttggatagttaccaat 389
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 795  gctttaataatgactaaaagactggtgagcaaaattaatacatcttggacagttaccaat 736

                                                                        
Query: 390  catttcagcatctggcttgctacaagtctcagagtcttttattttctcaaaataggcaat 449
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 735  catttcagcatctggcttgctacaagtctcagcgtcttttattttctcaaaataggcaat 676

                                                                        
Query: 450  tatttcaaacgct-atgtttcccttaaattgagagtaaaacaagtggtatctgtgacatt 508
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  tatttcaaacg-tgatgtttcccttaaattgagagtaaaacaagtggtatctgtgacatt 617

                                                                        
Query: 509  gctggcatctttgcttatcttcttttcaaatattttaatcgtanacagatgtattgatgt 568
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 616  gctggcatctttgcttatcttcttttcaaatattttaatcgtaaacagatgtattgatgt 557

                                                                        
Query: 569  ttgaattgatggacatgaagctaatatatcctacaatgctatcttanatactgctactca 628
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 556  ttgaattgatggacatgaagctaatatatcctacaatgctatcttaaatactgctactca 497

                                                                        
Query: 629  tatttctaggcttattatactcatcaacactatgttcacacttataccattcactgtatc 688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  tatttctaggcttattatactcatcaacactatgttcacacttataccattcactgtatc 437

                   
Query: 689  tctgaca 695
            |||||||
Sbjct: 436  tctgaca 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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