Query= MSMg01no080_l14.b1 MSMg01no080_l14.b1 CHROMAT_FILE:
MSMg01no080_l14.b1 PHD_FILE: MSMg01no080_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:43 2005
(535 letters)
>mm_chr6_136850435_136851369
Length = 935
Score = 1013 bits (524), Expect = 0.0
Identities = 532/536 (99%), Gaps = 4/536 (0%)
Strand = Plus / Plus
Query: 2 ggaattctctgctctcc--ggatcttcctctaaggccaagcttacttccctccttcagga 59
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctctgctc--catggatcttcctctaaggccaagcttacttccctccttcagga 259
Query: 60 gtcaaccctgcttggcatcctcatagccagttaataagtatttaaatgaatgattgagta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtcaaccctgcttggcatcctcatagccagttaataagtatttaaatgaatgattgagta 319
Query: 120 tatgaataaatgatgctttcccatactgcctagtatccatcctaccccttatcttcccaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatgaataaatgatgctttcccatactgcctagtatccatcctaccccttatcttcccaa 379
Query: 180 aacatatgtatttatacaggtctaatgaagacagttttcctttgagtcccaacccaatga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacatatgtatttatacaggtctaatgaagacagttttcctttgagtcccaacccaatga 439
Query: 240 ggcgagctcagagaggagagctaagagaagtgtatgcatggtagagcaattcatcggatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcgagctcagagaggagagctaagagaagtgtatgcatggtagagcaattcatcggatg 499
Query: 300 cttcgacttcagagacccactgtccctagaaattctgaccttcccagcaacctgagcatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttcgacttcagagacccactgtccctagaaattctgaccttcccagcaacctgagcatc 559
Query: 360 ggagagaccaagagcaatgaaatataaatgttacctggttgccatggtctcatccaagca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggagagaccaagagcaatgaaatataaatgttacctggttgccatggtctcatccaagca 619
Query: 420 taggataatgtacaatatcgtttatcctaagccctttatagtaacctgctggagtactcg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taggataatgtacaatatcgtttatcctaagccctttatagtaacctgctggagtactcg 679
Query: 480 actcttctctcaggaagtgtatggtggctattcgtggttgtcaacttgattacatc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actcttctctcaggaagtgtatggtggctattcgtggttgtcaacttgattacatc 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_l14.g1 MSMg01no080_l14.g1 CHROMAT_FILE:
MSMg01no080_l14.g1 PHD_FILE: MSMg01no080_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:43 2005
(511 letters)
>mm_chr6_137000647_137001557
Length = 911
Score = 988 bits (511), Expect = 0.0
Identities = 511/511 (100%)
Strand = Plus / Minus
Query: 1 aggtcataatggcaggaatgggaccggaccttgttcacatctggatctcagctttatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 aggtcataatggcaggaatgggaccggaccttgttcacatctggatctcagctttatggg 850
Query: 61 aggacattgcttacattcaaaaagtgggtcttccccagtaagcctttcttaatctctggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aggacattgcttacattcaaaaagtgggtcttccccagtaagcctttcttaatctctggg 790
Query: 121 gattctggaattggtctccaggccacactcaaagacgtgcctgactaatacaatcaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gattctggaattggtctccaggccacactcaaagacgtgcctgactaatacaatcaagtc 730
Query: 181 aacgatgaaaactacccagaacaagagttacagatccatgaacattgggaggagcatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aacgatgaaaactacccagaacaagagttacagatccatgaacattgggaggagcatata 670
Query: 241 caggactaaggacagtttgtgttcgcatcagccacaacgaaatatcttcatagtgtacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 caggactaaggacagtttgtgttcgcatcagccacaacgaaatatcttcatagtgtacaa 610
Query: 301 atgatacaggggagcttggggaaccagggaaggaggagaactttgccttaggtgtgagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atgatacaggggagcttggggaaccagggaaggaggagaactttgccttaggtgtgagac 550
Query: 361 taaattcgtattattacttatagccactctaatagtaccttaaaaagttgaacactgaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 taaattcgtattattacttatagccactctaatagtaccttaaaaagttgaacactgaat 490
Query: 421 ccaggaaacttggtttttgttctagaaaagtatatccaacatcctattacaaaagtatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccaggaaacttggtttttgttctagaaaagtatatccaacatcctattacaaaagtatac 430
Query: 481 aagcaagatttgacaagattggaaaccaaga 511
|||||||||||||||||||||||||||||||
Sbjct: 429 aagcaagatttgacaagattggaaaccaaga 399
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
