Query= MSMg01no080_o22.b1 MSMg01no080_o22.b1 CHROMAT_FILE:
MSMg01no080_o22.b1 PHD_FILE: MSMg01no080_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:59 2005
(548 letters)
>mm_chr6_80717965_80718912
Length = 948
Score = 1011 bits (523), Expect = 0.0
Identities = 546/563 (96%), Gaps = 15/563 (2%)
Strand = Plus / Minus
Query: 1 aaattttattaaaacagaaagtgtcttatgcataaaatatagagagctaagcaattaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaattttattaaaacagaaagtgtcttatgcataaaatatagagagctaagcaattaata 739
Query: 61 aaatccatagtagaagccgggcgtggtggcacatgcctttaatcccagcacttgggaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaatccatagtagaagccgggcgtggtggcacatgcctttaatcccagcacttgggaggc 679
Query: 121 agaggcaggcagctttctgagttcgaggccagcctggtctacaaagtgagttccagaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaggcaggcagctttctgagttcgaggccagcctggtctacaaagtgagttccagaaca 619
Query: 181 accagggctatacagagaaaccctgtctcgaa---------------aaaacaaaacaaa 225
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 618 accagggctatacagagaaaccctgtctcgaaaaaacaaaacaaaacaaaacaaaacaaa 559
Query: 226 acaaaacacccatggcagatatagtggcaatatattgaacactcaattatgctattaaaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acaaaacacccatggcagatatagtggcaatatattgaacactcaattatgctattaaaa 499
Query: 286 taatattagtgtacaaacacatgagtattcactggccagaaatcatggaaatttactacg 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taatattagtgtacaaacacatgagtattcactggccagaaatcatggaaatttactaca 439
Query: 346 gcataccactcaggttcagttcctagcacctacatgagcaagcatacaacatcctgtagc 405
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcatagcactcaggttcagttcctagcacctacatgagcaagcatacaacatcctgtagc 379
Query: 406 ttcagttccaacgtatctgaggcccacttcttgatttaaggaatccaatgcacatgatga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttcagttccaacgtatctgaggcccacttcttgatttaaggaatccaatgcacatgatga 319
Query: 466 gcatacaaacatgtaggctgccatgcatatacctatcattaaaattaagtatctctttta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcatacaaacatgtaggctgccatgcatatacctatcattaaaattaagtatctctttta 259
Query: 526 taatttgcatatgtttctcattc 548
|||||||||||||||||||||||
Sbjct: 258 taatttgcatatgtttctcattc 236
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_o22.g1 MSMg01no080_o22.g1 CHROMAT_FILE:
MSMg01no080_o22.g1 PHD_FILE: MSMg01no080_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:59 2005
(616 letters)
>mm_chr6_80576452_80577468
Length = 1017
Score = 1058 bits (547), Expect = 0.0
Identities = 595/617 (96%), Gaps = 11/617 (1%)
Strand = Plus / Plus
Query: 1 taagctctgttaacttgacgaggaatcaccactaccacattactgacataaaatgttgta 60
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagctctgtcaacttgacgaagaatcaccactaccacattactgacataaaatgttgta 260
Query: 61 ccaggaaatgaatcattattgtctctgggtagaggagagcctgacccttgatctcttaat 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ccaggaaatgaatcattattgtctctgggtagagaagagcctgacccttgatctcttaat 320
Query: 121 attttttctcccattttatccgtttagctttactgattttcaaaccaattcttgatagct 180
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttttctcccattttatccatttagctttactgattttcaaaccaattcttgatagct 380
Query: 181 acagagtacttttaaatgaaaagatcactgaggagtcccaaaatatcattaaatttgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagagtacttttaaatgaaaagatcactgaggagtcccaaaatatcattaaatttgtaa 440
Query: 241 acttgagaggcataatggaaaaaa-tgtcaataaatggaatatggccatttatttgtgac 299
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 acttgagaggcgtaatggaaaaaaatgtcaataaatggaatatggccatttatttgtgac 500
Query: 300 ttttcaaccagtttcctaattagtattccattgatgccacgtgacagaaacccaatatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttcaaccagtttcctaattagtattccattgatgccacgtgacagaaacccaatatat 560
Query: 360 tggtgggtcggaacataaaaacactttgtcacctgaaatacatgacaattaggaaacaaa 419
|||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 tggtgggtaggaacataaaaac----------ctgaaatacatgacaattaggaaacaaa 610
Query: 420 accaaaagactgtcagctccttcaagaacaaatgcttccaccatttctttttgtcttcca 479
|||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 611 accaaaagactgacagctcctccaagaacaaatgcttccaccatttttttttgtcttcca 670
Query: 480 ttcggttgcttctgtccttgatatttgcttcattattttcaaaccaagtcttcataaatc 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 671 ttcggttgcttctgtccttgatatttgcttcattattttcaaaccaagtctttataaatc 730
Query: 540 acaatgatcaaatgaataaaggctgaaaacattttatataggtaaaatcttgtatgccta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 acaatgatcaaatgaataaaggctgaaaacattttatataggtaaaatcttgtatgccta 790
Query: 600 tttttctctttagttca 616
|||||||||||||||||
Sbjct: 791 tttttctctttagttca 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space: 610242
Effective search space used: 610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
