BAC Information

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BAC

Clone NameMSMg01-081F17
Chromosome6 (Build37)
Map Location 145,875,661 - 145,875,900
singlet/doubletsinglet
Overlap genenone
Upstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3
Downstream geneSspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081F17.T7 (MSMg01no081_f17.b1)MSMg01-081F17.TJ (MSMg01no081_f17.g1)
ACCAG301978AG301979
length732743
length of high quality
(start - end)
246 (46 - 291)240 (72 - 311)
definitionCHROMAT_FILE: MSMg01no081_f17.b1 PHD_FILE: MSMg01no081_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:32 2005CHROMAT_FILE: MSMg01no081_f17.g1 PHD_FILE: MSMg01no081_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGGTACCCCCTCCTTAGTCATGGTGTGTGATAACATGCTGTT
GATGAGGATTTATGTTCACTGAGCATGTCAGCCTTTGGTTTCCTTTCTTA
AATTGTCTTCACCCAGCATTGGCACCAGAGAATGCTGGCCTGATAAAGTG
AGTTTGGAAGTGTTTCCTCGCCATCCACTTTTGTGGTGAGACTTGGAGAG
CCACCATCATCAGATTTTCAAGTGTGTGGCAGAACTCAGCAATAATACCA
CTTGGTTCTGGCTTTCATCTGCTGTGAGGCTTCTGATGAGTGGTAAGAGG
CATGTTCAAGGTCTCTGGTTCTTCACGAAGTGTCTGGTAGGACATGTCTC
TGGAGATGTGTGCATCCTGAGGTCCCCTGTTTGACCAACATTGTTCACAT
TCTGTGTCATTTCTCTGACACTGATGACTGTATGCTCTCTCATGTATTTT
CTTACCTTATCAGTTGATAACAAACTGGCTCATTATTTATTAACAATCCA
TCAGACGACTGAAGATATGACTAAATTGTTAAAAATACTATTTGTTCTTC
CAGAAGTCTAAAGTTAATATCCCATATAATAATTTGTATCTCATAACTAT
TTGTAATGTAATCCAATTCCCCTAAAATCTACTGTTTATTCATATTATCT
ATAATCAAATAAAAAACTATTTAAAATAAAAA
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACCTTCCTGTCAGTGAGAACCCATCTCT
TCTCAAGCAGCTTCCATGTGGAAAGCACCAGCTGGTTTTTCTGTCTTTCA
CAGCAGCCTGGCTCTTTTCATCTTATCAAGCCTGACACACACTTCCATGC
TAGCCCGCATCACAGGAGGATCATGAGCCCAGCTACCTCTAACAGTGATG
AGAACACTTAAGGCACGCTTGCTAATGCTTCTTCAGTATGAGGACACAGC
ACGAGGGCTGGCAGCTAGCTGACAAGAACGAACAGTAAAAGGCACAGGGC
TTATAAAAGGAGCGAGTCCTTTGGCCTTTAGAGGGTTAAGACTGCGCTAT
GTGAAGGACTTACCAGGACTTGGTCACCATGCCATCTCCCAGCATGCAAA
TAGCCATTCCAGGTCTAGCTGAATAATATCCTACCACACTGCTTTTGGCG
CTATGATCAACCCTCACTGTCCTCTATGACTAGATATATCATTCTCTTAA
TAGATCCTCTGAGGCTACACCTCTTAATCAGGTATTCTGTGAGACTTCTC
CAAAACAGGATCAACATGAACCACAGAAGACTCATTATGAACACAGTATA
ATCGCATACCCATGAAACGAACTGGTCTACTTAAACAGGCNACAATAATA
GAACGCTGCCCGATTGCCACTGCAGACATTCACGCATCGACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_f17.g1 MSMg01no081_f17.g1 CHROMAT_FILE:
MSMg01no081_f17.g1 PHD_FILE: MSMg01no081_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:32 2005
         (240 letters)



>mm_chr6_145875461_145876100
          Length = 640

 Score =  410 bits (212), Expect = e-119
 Identities = 233/240 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccttcctgtcagtgagaacccatctcttctcaagcagcttccatgtggaaagcaccag 60
           ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct: 201 caccttcctgtcagtgagatcccgtctcttctcaagcagcttccatttggaaagcaccag 260

                                                                       
Query: 61  ctggtttttctgtctttcacagcagcctggctcttttcatcttatcaagcctgacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtttttctgtctttcacagcagcctggctcttttcatcttatcaagcctgacacaca 320

                                                                       
Query: 121 cttccatgctagcccgcatcacaggaggatcatgagcccagctacctctaacagtgatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccatgctagcccgcatcacaggaggatcatgagcccagctacctctaacagtgatga 380

                                                                       
Query: 181 gaacacttaaggcacgcttgctaatgcttcttcagtatgaggacacagcacgagggctgg 240
           ||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 381 gaacatttaaggcacgcttgctaacgcttcttcagtatgaggacacagcacaaaggctgg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)