BAC Information

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BAC

Clone NameMSMg01-081P14
Chromosome6 (Build37)
Map Location 73,837,696 - 73,837,824
singlet/doubletsinglet
Overlap genenone
Upstream geneKcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081P14.T7 (MSMg01no081_p14.b1)MSMg01-081P14.TJ (MSMg01no081_p14.g1)
ACCAG302451AG302452
length778747
length of high quality
(start - end)
70 (188 - 257)129 (74 - 202)
definitionCHROMAT_FILE: MSMg01no081_p14.b1 PHD_FILE: MSMg01no081_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:21 2005CHROMAT_FILE: MSMg01no081_p14.g1 PHD_FILE: MSMg01no081_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGACCGCGGAATTC
TGTATTTCCCTTTCTTTACATTGAATAAATTTCCATTCTTTGTGTGTGCC
ACGTTTTCTTTAGCTTTGCATTTGTTGATGGATGTCTAGGACGGTTGAAC
AATTGGATATTGTGATGTCGTAGTATACACTAATGTGTAACTATCTATAT
GTTGCACTTATAATCATTCACACTTATATTTTGCTTTTATTTTTAATTAT
ATATATATTTCGTGTGTGCCTCTTTATGAGTGAGAGTGAGAGTGTGTAGT
GTGTGTTTGTGTTTATTTCTTTAAACTATCATTTTATATTACTATAAATT
TAAACACTCCATCATATTTCACCATTCTTAACTAAACAAAACTAATACTA
AATTAAAAACCCAAAACAAANATACACACTTATATCAAAAAACAACACCA
CAAACCTAAACAGTACCAAACATTAATATCCAAAATAACACCCNTCAAAA
CCCTTATCTCAATCAAATAACTCTCCATTTTCACCATTCACCATATACAC
AATATATCTCTCATTACATTTTCACTTACACATAACCAACAATATTAATT
ATATATACATAATCAAAATTAATACAATACCACAACCTTATTCATATCTT
TAAATCTAACCAAAACCCACTACAATCCACCCTACAATTACCAACACCCA
CTATACCACATACCAAAAACTCACTACCTACCCAAGCAACACAAAAACTC
CAATCTACACACTCATAATTTCCCCACT
ACTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGCTTGTATAAAGAATGTAAATAGTC
TTCTTCTATAGTAGTGATTAAACTATATTTACCAGCAATGATAATACAAA
TTTAGTTGGGCCATCACAAAACTATACTGGGAAGAGAAAGCATTCTGTGT
GGAAACTAGAACCCACAAAAACACTATAAAACAAGCTTTCACAATAATAG
TTTACTTGTCTTTTGAATAAGAATAGGCCCCAGCCAGGCATGGTGGTTCA
TGCCTTTATTCCCAGCCCTTGTGAGGCAGAGGCTAGGTGAATTTCTGAGT
TCCAGGCCAGCCTGGCCAACAGAGCGAGTTCCAGGGCATTCTTGTCTACA
CTATAATAACCCTGTCCCAAAAAACTATCTCCCCCCCCAAAAACAAGATT
AGGCCCATGGACTTCTGTATATGAATGCTTTGCTCTGATTTCAAATTAAT
ATGTGCGTAAATTGTGATAGCAAGAAATTTATCAGGTATAATAATCACGA
TCTTTCTTAAGCCAAGGATAGGTTACACCTCTTCCACTCTATCTCTCTCA
ACCACTAGCACATAGACATTTCATGCATCTAAGTCTTAATGCCTAACGAA
CATAACTCTTTTATATTTGCTACATTTTCCCCCCTAATTAATACACTTCA
TTAGAAACCTCCTATTCTGATTCACAGGCTTGCCCACTTCACAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_p14.g1 MSMg01no081_p14.g1 CHROMAT_FILE:
MSMg01no081_p14.g1 PHD_FILE: MSMg01no081_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:21 2005
         (129 letters)



>mm_chr6_73837496_73838024
          Length = 529

 Score =  226 bits (117), Expect = 3e-64
 Identities = 126/129 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcttgtataaagaatgtaaatagtcttcttctatagtagtgattaaactatatttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 329 aggcttgtataaagaatgtaaatagtcttcttctatagtagtgattaaaatatatttacc 270

                                                                       
Query: 61  agcaatgataatacaaatttagttgggccatcacaaaactatactgggaagagaaagcat 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 269 agcaatgataatacaaatttagttgggtcatcacaaaactatactgggaagagaaagcat 210

                    
Query: 121 tctgtgtgg 129
           || ||||||
Sbjct: 209 tccgtgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)