Query= MSMg01no082_b05.b1 MSMg01no082_b05.b1 CHROMAT_FILE:
MSMg01no082_b05.b1 PHD_FILE: MSMg01no082_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:28 2005
(564 letters)
>mm_chr6_97983450_97984413
Length = 964
Score = 951 bits (492), Expect = 0.0
Identities = 546/568 (96%), Gaps = 9/568 (1%)
Strand = Plus / Minus
Query: 5 gaattcctctctaatccctacactgtctgccttcgagcttagaacagcctctagagtgct 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaattcctctctaaaccttacactgtctgccttcgagcttagaacagcctctagagtgct 793
Query: 65 tctctgtactttcctgacccg-------tttttttttttaattaagattcaacttataaa 117
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 792 tctctgtactttcctggcccgttttttttttttttttttaattaagattcaacttataaa 733
Query: 118 gcatgaaattcatgatctggaatttacatttcagcagatgttatagatccacaatgtcct 177
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 732 acatgaaattcatgatctggaatgtacatttcagcagatgttatagatccacaatgtcct 673
Query: 178 ataatcctagtaatctaattccaaaacattcttatcatctagcctcaattatgtaaatac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ataatcctagtaatctaattccaaaacattcttatcatctagcctcaattatgtaaatac 613
Query: 238 tctctcagcttttcctcctactttgcctcaactcgtatcttgtatactccgaaatgtgat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tctctcagcttttcctcctactttgcctcaactcgtatcttgtatactccgaaatgtgat 553
Query: 298 tcactgtatcctaaccacatttatcgtatctataaacatgaatctttagcaatctgtcct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tcactgtatcctaaccacatttatcgtatctataaacatgaatctttagcaatctgtcct 493
Query: 358 gtgctcatgttctgtatagcctggtaatatgtatatgtcacccctgttttggccccaaat 417
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtgctcatgttctgtatagcccggtaatatgtatatgtcacccctgttttggccccaaat 433
Query: 418 aacattagcaccttttcctctctttggggactgactacatcgtcctgtgactatattctg 477
||||||||||||||| || ||| ||||| |||||||||||||||| ||||||||||||||
Sbjct: 432 aacattagcacctttccccctccttgggaactgactacatcgtcccgtgactatattctg 373
Query: 478 caaacacaaaccaagtaatccagagttcacacctccagatactcct-gttaactttccac 536
||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct: 372 caaacacaaaccaagtaatacagagttcacacctccagatactcccagt-aactttccac 314
Query: 537 tgccccaaatgtctcaaggccaggcact 564
||||||||||||||||||||||||||||
Sbjct: 313 tgccccaaatgtctcaaggccaggcact 286
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_b05.g1 MSMg01no082_b05.g1 CHROMAT_FILE:
MSMg01no082_b05.g1 PHD_FILE: MSMg01no082_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:28 2005
(595 letters)
>mm_chr6_97833850_97834844
Length = 995
Score = 1009 bits (522), Expect = 0.0
Identities = 584/622 (93%), Gaps = 31/622 (4%)
Strand = Plus / Plus
Query: 1 tccatttagaataggggaaaagtccatgaaagaaagagtatgttgtatttttaaattttt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tccatttagaaaaggggaaaagtccatgaaagaaagagtatgttgtatttttaaattttt 237
Query: 61 aatatatatgtgtatatataatctgcatacttgattatacatttaaatacagatataaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aatatatatgtgtatatataatctgcatacttgattatacatttaaatacagatataaac 297
Query: 121 ttaattatatatatgtatacatgtataagcttgattatatttgtacacatatataattgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttaattatatatatgtatacatgtataagcttgattatatttgtacacatatataattgt 357
Query: 181 atgtgtatgtatataaatgtatacatatgtatatgtaaatatatattatatatatcatac 240
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 358 atgtgtatgtatataaatgtata--tatgtatatgtaaatatatattatatat--catac 413
Query: 241 ttatatctatataacatattttatatagaacatagtatatttatattaaatatttatgat 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttatagctatataacatattttatatagaacatagtatatttatattaaatatttatgat 473
Query: 301 atatatat------atata-atac--------------------caaaatagttttctat 333
|||||||| ||||| ||| ||||||||||||||||
Sbjct: 474 atatatattgttttatatatatatatatatatatatatataaaacaaaatagttttctat 533
Query: 334 tgtattctgaatgtatatataatagttcatttatcagagtattacctgtatctggcttgg 393
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 534 tgtattctgaatgtacatataatagttcatttatcaaagtatcacctgtatctggcttgg 593
Query: 394 aataactctgaaataagaatggcttttatatttagcattttccccagttatctgaaattg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aataactctgaaataagaatggcttttatatttagcattttccccagttatctgaaattg 653
Query: 454 aagaatcaagaaaaaagaagacataataaagaaagaccaaacatggctcaccaagtctaa 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aagaatcaagaaaaaagaagacataataaagaaagaccaaacatggctcaccaagtctaa 713
Query: 514 actatgttgctggtctgtgggttcctagccttgtatccacagagctgcttgctgcctgct 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 actatgttgctggtctgtgggttcctagccttgtatccacagagctgcttgctgcctgct 773
Query: 574 atagggtgtacttgctgttaga 595
||||||||||||||||| ||||
Sbjct: 774 atagggtgtacttgctgctaga 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
