XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCTGTACTTTCTACATTAACAAAAACCCATCTCTACTTGCAAACACTGA
GGTTCCATATCTACCCACTTACCTTCTCTGGCTTCTTCCAAAAGCCAGTC
TTACTGCTTACCATGAGATAGAAAAGGTTAAAACGTTCTAACCTGGATAA
CTCTGCAATCGTTGGTGACTCCCAGTAGGGCTAATCTACTGGGACCTAAA
AATCCAATACATGTGTGATCACAGGGAAATGGTACCTGAGACCTTGGAAT
GGCCTTAGCTCTGTTCAACATATGATGAGTCAGCCTTCAGAAACCTGACT
TAGAACAGGGCCAGGCACCTGGTCTTTCTGATCATATAAAATTCACCTGA
AGCCCTGCAGGAGCTGTGCACAGTCAGAACTGCTGAGGGGCAAAATCACA
GGTGCTTGTGAGGACTTTTTGATCACTTCCCCCCAGAATGAGTTTCTGTG
TTGTTGAAAACATTCCCACAGGGAGTGAAAACCAGGCATGATTCTCTGTT
TCCTCCTTTTCTTCCCCCATTCTTTTTTCTGCTTCTACCCCTCCATTCTC
ACCTTGTCTTCCTCTTTTCCTCCTCCCGCAGTGCTTTTTTGTACAAAGAA
CAGAATGTTTCACAGTCTGTCTACAGCCTCTGACTTCCCTCCATTTTCTT
CTGAGA

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATCTTTTAATG
GGCATATTTGATTTTCTGGAATCCAGCTTATAAAATTGCCAAGCTTCTGT
AAGGCAAAACACAGTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGA
AAGGATTTTTACCAATCCTAAAACTTACAGGGGACTAATATCCATTCTGA
GCAATTCTAAATTCCCCAGAAAGACAACTAGAACAACCACCTTCAGCCCC
CAAGCCCAGGACCTGGGATGACAACTCTTGATAACTTCTTCCAGCTGAAT
ACGGGAGTTGAGATATCTTTCAAGGAGGGCAGGGAAGGGAAAAATGGGAG
AGTTGCCCAGTCCTTATTTAGTCCATGCCTTCTATTGTTCTACTCTCTGA
TGTCTAAGTTGTGTTTGTATCCTTCGGAGTGGTTTATTTACGAATTGCGC
TTTTGTAGTCTTTGACATTTGTACGATCCATAAAGTCAGTGAAGCTATTT
TCCATGATGCGCCCTATTTAACATGCAAAATGCGCAATTATCTATTATTC
CTATTTATTTGCTGATCGCCTTGGGTACTTTTCCCTTGCTTGTTTGTTTG
TTTATTATGTTTTCTATCTTTCTAGTCTTTTATTTTTTCTCCTCTTTTTT
CTTTTTTTGTTTT

Query= MSMg01no083_a14.b1 MSMg01no083_a14.b1 CHROMAT_FILE:
MSMg01no083_a14.b1 PHD_FILE: MSMg01no083_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:39 2005
         (666 letters)



>mm_chr6_50708402_50709468
          Length = 1067

 Score = 1201 bits (621), Expect = 0.0
 Identities = 654/665 (98%), Gaps = 5/665 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttct-gtactttctac-attaacaaaaacccatctctacttgcaaacactgagg 62
           |||||||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattcttctggt-gtttctacaattaacaaaaacccatctctacttgcaaacactgagg 650

                                                                       
Query: 63  ttccatatctacccacttaccttctctggcttcttccaaaagccagtcttactgcttacc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttccatatctacccacttaccttctctggcttcttccaaaagccagtcttactgcttacc 590

                                                                       
Query: 123 atgagatagaaaaggttaaaacgttctaacctggataactctgcaatcgttggtgactcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atgagatagaaaaggttaaaacgttctaacctggataactctgcaatcgttggtgactcc 530

                                                                       
Query: 183 cagtagggctaatctactgggacctaaaaatccaatacatgtgtgatcacaggg-aaatg 241
           ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 529 cagtaggactaatctactgggacctaaaaatccaatacatgtgtgatcac-gggaaaatg 471

                                                                       
Query: 242 gtacctgagaccttggaatggccttagctctgttcaacatatgatgagtcagccttcaga 301
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 atacctgagaccttggaatggccttagctctgttcaacatatgatgagtcagccttcaga 411

                                                                       
Query: 302 aacctgacttagaacagggccaggcacctggtctttctgatcatataaaattcacctgaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aacctgacttagaacagggccaggcacctggtctttctgatcatataaaattcacctgaa 351

                                                                       
Query: 362 gccctgcaggagctgtgcacagtcagaactgctgaggggcaaaatcacaggtgcttgtga 421
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtcctgcaggagctgtgcacagtcagaactgctgaggggcaaaatcacaggtgcttgtga 291

                                                                       
Query: 422 ggactttttgatcacttccccccagaatgagtttctgtgttgttgaaaacattcccacag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggactttttgatcacttccccccagaatgagtttctgtgttgttgaaaacattcccacag 231

                                                                       
Query: 482 ggagtgaaaaccaggcatgattctctgtttcctccttttcttcccccattcttttttctg 541
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 230 ggagtgaaaaccaggcatgattctctttttcctccttttcttcccccattcttttttctg 171

                                                                       
Query: 542 cttctacccctccattctcaccttgtcttcctcttttcctcctcccgcagtgcttttttg 601
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 170 cttctacccctccattctcaccttgtcttcctcttttcctcctcccacagtgcttttttg 111

                                                                       
Query: 602 tacaaagaacagaatgtttcacagtctgtctacagcctctgacttccctccattttcttc 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tacaaagaacagaatgtttcacagtctgtctacagcctctgacttccctccattttcttc 51

                
Query: 662 tgaga 666
           |||||
Sbjct: 50  tgaga 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space:   693392
Effective search space used:   693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)