Query= MSMg01no083_k15.b1 MSMg01no083_k15.b1 CHROMAT_FILE:
MSMg01no083_k15.b1 PHD_FILE: MSMg01no083_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:27 2005
(570 letters)
>mm_chr6_37918806_37919782
Length = 977
Score = 984 bits (509), Expect = 0.0
Identities = 558/579 (96%), Gaps = 11/579 (1%)
Strand = Plus / Plus
Query: 1 ttctttcctggacaggagtggggagaa-aaaacctcttcctcccatggtagttttgtttt 59
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttctttcctggacaggagtggggagaataaaacctcttcctcccatggtagttttgtttt 260
Query: 60 tccaagctaagaatgggcttggtgtttggctgccacacgaaggggtaggtgcagaaatgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaagctaagaatgggcttggtgtttggctgccacacgaaggggtaggtgcagaaatgt 320
Query: 120 cactgagaatggtatcaggaggccacccccagtccgtggtcactacactgccagctgcat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgagaatggtatcaggaggccacccccagtccgtggtcactacactgccagctgcat 380
Query: 180 ttccaagatgcctttgcagttcatggctgtgagcagaacacacattctttgtttacactg 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccaaggtgcctttgcagttcatggctgtgagcagaacacacattctttgtttacactg 440
Query: 240 ttgaacatgcaaaggagatctgagccagactaatgtgagttgttgcttcctgagaaacaa 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaacatgcaaaggagacctgagccagactaatgtgagttgttgcttcctgagaaacaa 500
Query: 300 agggttttgagtttcaactgaaagtattacaaagagaaagtgtattattttcctttt--- 356
||||||||||||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct: 501 agggttttgagtttcaactgaaagtattatggagagaaagtgtattttttt--ttttttt 558
Query: 357 ----gtctatttaaagtccatatgaatgaggaaaatagatctgattggtcattaaaattg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttggtctatttaaagtccatatgaatgaggaaaatagatctgattggtcattaaaattg 618
Query: 413 cagacatgacctcctgagttaaagtactgtatttgttttttaatcaaataaccatgctat 472
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 619 cagacatgacctcctgagttaaagtactatatttgttttttaatcaaataaccatgctat 678
Query: 473 attttttaaagtatttgatagctccatgtaaaataatagttgataattttacatttattt 532
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atttttaaaagtatttgatagctccatgtaaaataatagttgataattttacatttattt 738
Query: 533 tgccttgggcaggaattctgtcattatttc-atacaggt 570
||||||||| |||||||||||||||||| | ||||||||
Sbjct: 739 tgccttgggtaggaattctgtcattattcccatacaggt 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 977
Length adjustment: 10
Effective length of query: 560
Effective length of database: 967
Effective search space: 541520
Effective search space used: 541520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_k15.g1 MSMg01no083_k15.g1 CHROMAT_FILE:
MSMg01no083_k15.g1 PHD_FILE: MSMg01no083_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:27 2005
(520 letters)
>mm_chr6_38020631_38021550
Length = 920
Score = 762 bits (394), Expect = 0.0
Identities = 471/522 (90%), Gaps = 42/522 (8%)
Strand = Plus / Minus
Query: 1 agtattaagagcaaggaggagatcatgagtttgcattgccagcatcctggattgcttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agtattaagagcaaggaggagatcatgagtttgcattgccagcatcctggattgcttgtg 423
Query: 61 gccgacagagtcagcatggtgggtggagggtctgagaagacagttggatggaagcagggg 120
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 422 gctgacagagtcagcatggtgggtggagggtctgagaagacagttgaatggaagcagggg 363
Query: 121 cctaaaagctctctaaggccacaatctgttcctcccatgtaccttccacagctgtttgag 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cctagaagctctctaaggccacaatctgttcctcccatgtaccttccacagctgtttgag 303
Query: 181 cagctagtcagactggaagtatatataacactgcagggttgtggatctagggagagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagctagtcagactggaagtatatataacactgcagggttgtggatctagggagagagga 243
Query: 241 tttcagagagacagaaacgacacagttacagccttgcttcctgttctacctctttctctt 300
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct: 242 tttcagagagacagaaaagacacagttacagccttgcttcctatcctacctctttctctt 183
Query: 301 cctcttccttttcctcctccccctcttcttcctcttcctcctcctccttttcctcctctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cctcttccttttcctcctccccctcttcttcctcttcctcctcctccttttcctcctctt 123
Query: 361 tctcttcttcctcttcctcctcctccttttcctcatcttcctcttcttcctcttcctcct 420
||||||||||||||||||| ||
Sbjct: 122 ---------cctcttcctcctcctcctt------------------------------ct 102
Query: 421 cctcttttcacgggagtgctataacattcctttccttcttcccctcccctcctcttccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 101 cctcttttcacgggagtgctataacattcctttccttcttcccctcccctcctctcccct 42
Query: 481 cccctcccctc--ttctacttccccgactttctgtttttgaa 520
||||||||||| |||||||||| | |||||||||||||||
Sbjct: 41 cccctcccctcccttctacttcct-gtctttctgtttttgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
