Query= MSMg01no084_i20.b1 MSMg01no084_i20.b1 CHROMAT_FILE:
MSMg01no084_i20.b1 PHD_FILE: MSMg01no084_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:36 2005
(543 letters)
>mm_chr6_106205114_106206056
Length = 943
Score = 996 bits (515), Expect = 0.0
Identities = 533/539 (98%)
Strand = Plus / Plus
Query: 5 gaattcttcttaagacactctttgacttctcaattgtgttttggctgacaattaaaatag 64
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttattaagacattctttgacttctcaattgtgttttggctgacaattaaaatag 264
Query: 65 agacagtgtgctcactaaaacacagtgcattagtcaatacccaagaactaatatactgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacagtgtgctcactaaaacacagtgcattagtcaatacccaagaactaatatactgca 324
Query: 125 caatttcaaggttttttaagtgcatcaaaattttagtgacataagaaattttggtcttcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caatttcaaggttttttaagtgcatcaaaattttagtgacataagaaattttggtcttcc 384
Query: 185 ttcttcttgagtttcatgtgttttgcaaattgtatcttgggtattctgaccttctgagct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 ttcttcttgagtttcatgtgttttgcaaattgtatcttgggtattctgaccttctgggct 444
Query: 245 aatatccacttatcaactcgtgccctatcatgtgtattcttttgtgactgggttagctca 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 aatatccacttatcaactcgtgccctatcatgtgtgttcttttgtgactgggttagctca 504
Query: 305 cttaggatgatataccctagatccatccatttttctaagaatttcataaattcattgttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttaggatgatataccctagatccatccatttttctaagaatttcataaattcattgttt 564
Query: 365 ttaagagctgagtagtactccattgtgtaaatgtaccacattttctgtgtccattcttct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaagagctgagtagtactccattgtgtaaatgtaccacattttctgtgtccattcttct 624
Query: 425 gttaagggacttctgggctctttccagcttctgcctattgtaaatcagcctgctatgaac 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttaaggaacttctgggctctttccagcttctgcctattgtaaatcagcctgctatgaac 684
Query: 485 ataatggataatgtgtccttattacaagttggaccatcttctgggtatatgcccaggag 543
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataatggagaatgtgtccttattacaagttggaccatcttctgggtatatgcccaggag 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_i20.g1 MSMg01no084_i20.g1 CHROMAT_FILE:
MSMg01no084_i20.g1 PHD_FILE: MSMg01no084_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:36 2005
(414 letters)
>mm_chr6_106358500_106359314
Length = 815
Score = 787 bits (407), Expect = 0.0
Identities = 413/415 (99%), Gaps = 1/415 (0%)
Strand = Plus / Minus
Query: 1 acttgcctagtgacaaaagcaccttgtcactacaaat-aaaaaaaaaatatatgggtggc 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 615 acttgcctagtgacaaaagcaccttgtcactacaaataaaaaaaaaaatatatgggtggc 556
Query: 60 agaaaaggcagctcattggtcagcctgtaaacactatcctctaaccaatgataagaacat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agaaaaggcagctcattggtcagcctgtaaacactatcctctaaccaatgataagaacat 496
Query: 120 tgtgttgctaaagccactggacacagctaactattcaacatcacaggaaacaaagtaata 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgtgttgctaaagccactggacacagctaactattcaacatcacaggaaacaaagtaatt 436
Query: 180 ttcctcaactcaaccgaggggctggtttgaccgatgtgttaaacagtaagttctccagca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttcctcaactcaaccgaggggctggtttgaccgatgtgttaaacagtaagttctccagca 376
Query: 240 gaacattccacagaaagcttgtctgctggggggttgagtcatgcagtgcacatctgccca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaacattccacagaaagcttgtctgctggggggttgagtcatgcagtgcacatctgccca 316
Query: 300 ctcttgctcttactgtgctgtgcttgactgcttctgctcccctaccatgggaggaagtcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctcttgctcttactgtgctgtgcttgactgcttctgctcccctaccatgggaggaagtcc 256
Query: 360 tgaaaataactctccctgagatctctcaggaaataaaaaagaagaagaagaagaa 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgaaaataactctccctgagatctctcaggaaataaaaaagaagaagaagaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 815
Length adjustment: 9
Effective length of query: 405
Effective length of database: 806
Effective search space: 326430
Effective search space used: 326430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
