BAC Information

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BAC

Clone NameMSMg01-087B08
Chromosome6 (Build37)
Map Location 11,068,892 - 11,069,242
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264, LOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087B08.T7 (MSMg01no087_b08.b1)MSMg01-087B08.TJ (MSMg01no087_b08.g1)
ACCAG306214AG306215
length707725
length of high quality
(start - end)
354 (22 - 375)44 (73 - 116)
definitionCHROMAT_FILE: MSMg01no087_b08.b1 PHD_FILE: MSMg01no087_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:04 2005CHROMAT_FILE: MSMg01no087_b08.g1 PHD_FILE: MSMg01no087_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATAGTTCGAGGATCCGCGGAATTCTCAAAGGTGCTAACTCTAA
CAGAATATTGCAAAGTATAGCCATTTATATTCATTTTTAATGTAGTTAAA
ACTTCCATTGAGCAGTAGTGTCATTTTATGAAAGCTTACTTTATAGGTGA
TGGTTTTTTGCAGTGTCAATTAACTTTCTGACCGTCAGTACTCAAATCTC
ATTTGTAAAGAGAAATAAGGCAAGGCACAAACAATTAAAATTGGAAAGTA
GATTGGTAGATTATTATGGCATTAAAGGAATACCCTTGCAAAAGTTATCA
TTCATACTTACGAGATTTTCTTTTCTTAAAATTTTTATTTATTTATGAGT
ATGTGTGTATGAGTGTATGTTTGTATCCATTCCACTACATTCCCCCCCCC
CTACTCTCTATCTTCTAATCTTTCCTTCCCTCTAACCTTACCTTCCCCTT
ATCTCCTCCTTCCTTAATCTCCCTCCTCCTTATCTCCCTTCTCCATTTCT
TTTCACTTTTCCTTTTCCCCCCTCCTATAATTTCTTCCTCAACATCCAAT
CCCTCTCTTATCTTTCTTACTCCATCCTTCTTTTCTTTTCCTTTTTCCCT
TCCTTCTCTTCTTTCTCTTACTACCCCAAATTTCATTTCCTTCTTTCCCT
TCTTATACCCCCCTTCTTTGTACTTCCCTTTCCATTCCTTCTTCCTTCCC
TTCCCTC
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGAATTTCTTAGGCAAATGGATGGAAT
TAGAAAATATCCTGAGAGAGTCCCCCAATCTCCTCAAAAAACACACATGT
CATACATTCACTGATAAGTGGATATTAGCGCCAAAGCTTGATCCAATTCA
CAGACTGAATAAAGCTCAAGAAGAAGAAAGACCAAAGTGTGCATGCTTCA
GTCCTAGTTAGAAGGCGGAACAAACTACTCACTGGACCAAACACTGAGAC
TATGTATACACCATAGCCTGATCTAAAGGTCATCCAGAGACTGCTCTACC
TGGGCATCCATCTTTTTATACAGTCACCCCACCCAGACACTATTGCAGAT
CCCATCAAGCGCATACTGCCCCGACCCTGATATACATGTCTCTTGAGATG
CTGTGCCAGTGCTTGACACACTCACAGGTGTATGCTCACAGTCAACCATT
GTACTTGATCACGTACTTCCCAACGTCGAATTCACATAAACTACTGATTC
TCCCTTCATTCCCATAGGAAGAAAACTATCGTCCTACAATCTTACCCTTT
ACATCCCCCAGTCACCTCAAATACTACCCCCGGCACACTTTTGGATCCCC
CCCTGGCTTTTTCCACTCCATGCTTTTCCCGCATGTTCTTGTCCTTTTAC
TCGCTTGATCTCCCCTTACGTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_b08.b1 MSMg01no087_b08.b1 CHROMAT_FILE:
MSMg01no087_b08.b1 PHD_FILE: MSMg01no087_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:04 2005
         (354 letters)



>mm_chr6_11068689_11069442
          Length = 754

 Score =  656 bits (339), Expect = 0.0
 Identities = 348/351 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaaaggtgctaactctaacagaatattgcaaagtatagccatttatattcat 63
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaaaggtgctaagtctaacagaatattgcaaagtatagccatttatattcat 263

                                                                       
Query: 64  ttttaatgtagttaaaacttccattgagcagtagtgtcattttatgaaagcttactttat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttaatgtagttaaaacttccattgagcagtagtgtcattttatgaaagcttactttat 323

                                                                       
Query: 124 aggtgatggttttttgcagtgtcaattaactttctgaccgtcagtactcaaatctcattt 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 aggtgatggttttttgcagtgtcaattaactttctgactgtcagtactcaaatctcattt 383

                                                                       
Query: 184 gtaaagagaaataaggcaaggcacaaacaattaaaattggaaagtagattggtagattat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaaagagaaataaggcaaggcacaaacaattaaaattggaaagtagattggtagattat 443

                                                                       
Query: 244 tatggcattaaaggaatacccttgcaaaagttatcattcatacttacgagattttctttt 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 tatggcattaaaggaatacccttgcaaaagttatcattcatacttatgagattttctttt 503

                                                              
Query: 304 cttaaaatttttatttatttatgagtatgtgtgtatgagtgtatgtttgta 354
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttaaaatttttatttatttatgagtatgtgtgtatgagtgtatgtttgta 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)