Query= MSMg01no088_d09.b1 MSMg01no088_d09.b1 CHROMAT_FILE:
MSMg01no088_d09.b1 PHD_FILE: MSMg01no088_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:36 2005
(598 letters)
>mm_chr6_47317689_47318686
Length = 998
Score = 698 bits (361), Expect = 0.0
Identities = 399/423 (94%), Gaps = 20/423 (4%)
Strand = Plus / Minus
Query: 186 tcattcttcaggagtcatctacctcagtgtcagagacagaattctggggtccatggctct 245
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 998 tcattcttcaggagtcatctacctcagtgtcagagacagaattctggagtccatggctct 939
Query: 246 cttgggttaggttgcctgaccagtgagctccaaggatcctctgtgtctgccttcccagag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 cttgggttaggttgcctgaccagtgagctccaaggatcctctgtgtctgccttcccagag 879
Query: 306 ctgggattactagtgtatgctcccacatgtagctttttaggtgaagtgttgggggtagaa 365
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ctgggattacaagtgtatgctcccacatgtagctttttaggtgaagtgttgggggtagaa 819
Query: 366 ctcaggtcttcatgcttgcttggcaagcattttaccaactgagctctctcttcagttccc 425
|||||||| ||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 818 ctcaggtcctcatgcttgcttg---agc-------caactgagttctctcttcagttccc 769
Query: 426 tgactataccatttttatgctggaaaattccaggtcagcgtgactcaggtagagcacaag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgactataccatttttatgctggaaaattccaggtcagcgtgactcaggtagagcacaag 709
Query: 486 catactgaggaagcttcccacaaggacttgtgtctccgaggaagagtgccaatctcattg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 catactgaggaagcttcccacaaggacttgtgtctccgaggaagagtgccaatctcattg 649
Query: 546 aggttatggactcttttccatctg----------cctttaaatgttctcaagctctgaca 595
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 648 aggttatggactcttttccatctgtccccctctgcctttaaatgttctcaagctctgaca 589
Query: 596 cac 598
|||
Sbjct: 588 cac 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_d09.g1 MSMg01no088_d09.g1 CHROMAT_FILE:
MSMg01no088_d09.g1 PHD_FILE: MSMg01no088_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:36 2005
(389 letters)
>mm_chr6_47238677_47239465
Length = 789
Score = 721 bits (373), Expect = 0.0
Identities = 385/389 (98%)
Strand = Plus / Plus
Query: 1 gcacagcaaagcagctgtcagtatggtggccagggagcaaggagaggagtagaaagggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacagcaaagcagctgtcagtatggtggccagggagcaaggagaggagtagaaagggcc 260
Query: 61 caggaactgttaacatatctccaaggattctgtagcaatggtctgcttcctccagctaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaactgttaacatatctccaaggattctgtagcaatggtctgcttcctccagctaga 320
Query: 121 gtctcacctcctaaggtttccagaacctgcccaaataggacgaacctccaacagatgagt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gtctcacctcctaaggtttccagaacctccccaaataggacgaacctccaacagatgagt 380
Query: 181 gttttagcacttcgtatgtggtatcattcagggatccaggagaaatgtatttaatatgga 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gttttagcacttcgtatgtggtatcattcggggatccaggagaaatgtatttaatatgga 440
Query: 241 atgtatttacaggacgtaagtctgcccctgagattcattagtatctctttattttactag 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtatttacaggatgtaagtctgcccctgagattcattagtatctctttattttactag 500
Query: 301 cccaagtttaggtttgctcacaatgtttctcaagatatagactccctgatatttcagcac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaagtttaggtttgctcacaatgtttctcaagatatagactccctgatatttcagcac 560
Query: 361 cactagaattgtttggctctcccaggggg 389
|||||||||||||||||||||||||||||
Sbjct: 561 cactagaattgtttggctctcccaggggg 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
