BAC Information

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BAC

Clone NameMSMg01-088D10
Chromosome6 (Build37)
Map Location 85,918,855 - 85,919,025
singlet/doubletsinglet
Overlap genenone
Upstream geneExoc6b, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11
Downstream geneFigla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088D10.T7 (MSMg01no088_d10.b1)MSMg01-088D10.TJ (MSMg01no088_d10.g1)
ACCAG307031AG307032
length708747
length of high quality
(start - end)
316 (44 - 359)39 (177 - 215)
definitionCHROMAT_FILE: MSMg01no088_d10.b1 PHD_FILE: MSMg01no088_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:36 2005CHROMAT_FILE: MSMg01no088_d10.g1 PHD_FILE: MSMg01no088_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACTGAACTCGGCCACAAACTCGAATTCAACCAAGACTTTGCTTGTG
CTTGCTGTGTCAGCCAAAGAAATGTCTTTATCTACACCGTGCCAGCCATT
ATGAAGGGTGGCACAGAAGACTTCCCCTTACATTATTGCACATTTTAAAC
GTGAGAACCTGCAGCTTCGTCTCCTTCCCCATGGCCGACCCCTCATGCAT
CCTGCTCGTGTTCACGCCTCTCACCTTTGCTAACAGCACAGACCTTGACA
GCGTCATTGTATTAACCAGGGTTCTGGCGTCTCACACACATGCTTGCCCT
TGCTATTCAGAGACATGGGGACCTAAGGTGGTGGTGCCACAAATAAGGGA
TCTCTTGAGTACGACATTTAGTTCTGCCTCCGCCCACAAGGCCCAGGAGG
TAGACAAGAGCTGGTAGGCCAGCAGGGTGTTGCAGGCATTGTTGCGCATT
TTGACTGCTCCATCTCCCTTCACAAGGCATTTCCGTCTCTTGCCTTATCG
CCGGTTTGTGTCTGAGCCCAGATTCCCTCTTCTCTCCAACCTATGCCGCA
TGCCATATGACCACAGGTTATCCTCCCCTTGTTTCTGCCCTGTTTTCCTA
CTACCGTGGTCCCCCCGTTTTTCCTCGTTCCTTCACCCCTGTCATGGCCC
CGCCCCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAGACCAGCCAGCTAGCCAGCCAGCCAGCCAGTCACCCAGGGCT
AAATACTGAGACCCTGTCAGAAAGAAAAGAAAAGGAAAGGAAAGGAAAGA
TTATAAGAAAGAAAAGGAAGAAATAAAACAAAACTATATGCATATGTGTC
TGTTTGTACATGCAAGCATCCATAGAGGTCACAAGAGCATCAGATCTTAT
AAGCTATAAATTTTAAGCGCTGGCTACCAAACCTGGATTTTCTGAAAGAG
CAGCAAACATTCTGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTTTTTT
TCCCCCCCCCCTCTCTATTTTCCTCTACCTTCCCCTTTTTTCTTTTTCTT
TCCCCACCCATCTATTAATATTTTTTCTACCCGTTAACTAATTTTTCCAC
TATTTTCTCACCTTCACTCTTTTTTTTTTTTTTTTACCTTTCTCCTATCC
ATTCATAACTTGTTATCCACTTCTTATTCTGCTATCTGCCCATCAATTCC
CCCCCACTTATTCATTTTTTCCTATTCCTCCCCCAATTTCCTTATTCTCC
TACGCCGTCTATTTTCTTCTTCTATTTTTCACTCCCCCCTTTTTTTACAT
TATTCTCCCCCTCTCCATTATTTCTTTTTCTCCACTTTCTCCCCCCCTTT
ACTCCCTCTTTCCTCTACCCCCCTTTATTACCCTTATCCCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_d10.b1 MSMg01no088_d10.b1 CHROMAT_FILE:
MSMg01no088_d10.b1 PHD_FILE: MSMg01no088_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:36 2005
         (316 letters)



>mm_chr6_85918510_85919225
          Length = 716

 Score =  246 bits (127), Expect = 2e-69
 Identities = 160/171 (93%)
 Strand = Plus / Plus

                                                                       
Query: 146 cacattttaaacgtgagaacctgcagcttcgtctccttccccatggccgacccctcatgc 205
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 346 cacattttaaacgtgagaacctgcagcttcgtctccttccccacggccgacccctcacgc 405

                                                                       
Query: 206 atcctgctcgtgttcacgcctctcacctttgctaacagcacagaccttgacagcgtcatt 265
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |
Sbjct: 406 atcctgctcgtgttcacgcctctcacctttgctgacagcacagaccttggcagtgtcact 465

                                                              
Query: 266 gtattaaccagggttctggcgtctcacacacatgcttgcccttgctattca 316
           ||||||||||||||||||||| |||||||||| | ||| ||||| ||||||
Sbjct: 466 gtattaaccagggttctggcggctcacacacacgtttgtccttgttattca 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)