BAC Information

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BAC

Clone NameMSMg01-088H17
Chromosome6 (Build37)
Map Location 10,906,518 - 10,906,749
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264, LOC100040285, LOC667650
Downstream geneAA545190, Ndufa4, Phf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088H17.T7 (MSMg01no088_h17.b1)MSMg01-088H17.TJ (MSMg01no088_h17.g1)
ACCAG307227
length812711
length of high quality
(start - end)
---236 (108 - 343)
definitionCHROMAT_FILE: MSMg01no088_h17.b1 PHD_FILE: MSMg01no088_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:58 2005CHROMAT_FILE: MSMg01no088_h17.g1 PHD_FILE: MSMg01no088_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC
CCCNNNNNTTCTAATNNNNNTCATCTATXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGTATTCTATCATACAACCA
CCATATATAGTGCTACTGCCTTACTAATTCTGCGTGCGCATATACCCGCC
ATCGTTTTGATGTGAATATAGACATGAGCGGATGACGAATGTGXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACTAT
ACTTCCTTCCACAACCTTATGTTTGAAGAACTCCCACTACGCTTGAAGAT
TTTTGTCTTATATTCCTTGCTTTTCATATTTAACTCGGTTACTGAAAACG
CATACCTTTCTTTAATAATCCTTATTCCACCAATTCCGATTACTATTGAT
GGTTTTTTCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTGAGAATGCAGGATTTCCTAACTCTTGTATTTGATTGAAATAT
TACGTAATAATCTGGTTTTATTGATATGAATTCCAACGAAATAAGAGAAC
TTCCATGCCTTTCTCAGAGAAACGAGATATTGTAGATAATCCTAAAATTA
AATTATATATGTTGTAACTCTCTTTTATATTCTGCCCAAATCATTAAATT
AAGGGAATTGCTTTACTTTATATCAAGTAGAAAATAATCTAACAAGAGAC
AGTATGGCAATTTCCACTAGGTAATGAAATATCTATGTGTGTTCATTTAT
CATAATTTATATATGATATTACTAACAGTTAAATGTATTGAGAGCAATAT
CAAAAGTTCCTTACATGAATTATGACAATTAATATATCTACAGCTATAAA
ACTTAGATACCTTTATTAATGAAAACACTGAGCCACTCAAAGGAATTATA
TACCTTATATTATATGAGAAACTGGCTCCAATATGGATATCTACAATAAA
TGGAGGTATTCAGCTTTTCCAAAGAAACATCAGTGTTCCATTTTATAATT
TCTTCACGAGCGGCGGTCTGAATCATAACTACATTCTATTGAAATGAACA
CATATTCTTCATGTCATTCCCCCCCCCTGTTGCCTAAATGGACACTGGTA
ACATTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_h17.g1 MSMg01no088_h17.g1 CHROMAT_FILE:
MSMg01no088_h17.g1 PHD_FILE: MSMg01no088_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:58 2005
         (236 letters)



>mm_chr6_10906318_10906953
          Length = 636

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatctggttttattgatatgaattccaacgaaataagagaacttccatgcctttctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatctggttttattgatatgaattccaacgaaataagagaacttccatgcctttctcag 260

                                                                       
Query: 61  agaaacgagatattgtagataatcctaaaattaaattatatatgttgtaactctctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaacgagatattgtagataatcctaaaattaaattatatatgttgtaactctctttta 320

                                                                       
Query: 121 tattctgcccaaatcattaaattaagggaattgctttactttatatcaagtagaaaataa 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattctgcccaaatcattaatttaagggaattgctttactttatatcaagtagaaaataa 380

                                                               
Query: 181 tctaacaagagacagtatggcaatttccactaggtaatgaaatatctatgtg 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaacaagagacagtatggcaatttccactaggtaatgaaatatctatgtg 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)