BAC Information

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BAC

Clone NameMSMg01-088N10
Chromosome6 (Build37)
Map Location 20,444,745 - 20,445,265
singlet/doubletsinglet
Overlap geneLOC100040838
Upstream genenone
Downstream geneKcnd2, LOC100041343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088N10.T7 (MSMg01no088_n10.b1)MSMg01-088N10.TJ (MSMg01no088_n10.g1)
ACCAG307490AG307491
length691689
length of high quality
(start - end)
436 (47 - 482)522 (74 - 595)
definitionCHROMAT_FILE: MSMg01no088_n10.b1 PHD_FILE: MSMg01no088_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:27 2005CHROMAT_FILE: MSMg01no088_n10.g1 PHD_FILE: MSMg01no088_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTACCTCTGAGCCCTATTTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCCTGAGTTCTTTATGTATATTAGATATTATTCCC
CTATCTGGTTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTAGTGGCCT
TTTTGTTTTATTGATGGTGTCTTTTGCCTTACAAAAGCTTTGCAGTCTTA
TGAGGTCCCATTTGTCTATTCTAGATCTTACAGCACAAGCCATTGCTGTT
CTCTTCAGGAATTTCCCCCCTGTGCCCATATCTTTGAGGCTTTTCCCCTC
TTTCTCCTCTATAAGTTTCAGTGTCTCCGGTTTTATGTGGAGGTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCAC
ATTCTTCTACATGATAACCACCAGATGTGATAGCTTCATTTGTCGAAAAG
GCTGCCTTTTTTCCACTGGATGGCTTTAGCTCCCTTGTCATACACCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCCTTTCCATTGG
CCTACTTGTCTGTCGCTATACCAGTACCATGTTTTTTTTATCATAATTGC
CCTGTTTTACTGCTTTATGTCAGGCTTGCTGATTCCTCCTA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCCAATCACATGACTGGAAGACCTTC
TTTGTAGTCATTGACTTCAAAACCCAAGACTATTCCATGAGGATTAAATT
TTTGTACTTTGAGAATGGTGAATGCTATTTCCCAAAGCCTAAAGATCACT
ATGTACACACTTTTTATTATTTATTATTAAGTAGAGTATATCATAAACAG
AAATGTGCTGGTAATATGAAATCATGTTTTGGCAATGTACAGATGCCAAA
ATTAAACAATTAAAATGTATACTATAAATGGTAGCAATTTAAACTAAATA
TGGAAAGAAATAGTGCACATTTACTGAGAATTAAACCAATAGATTTATAA
ACCAATACTTCAATATTTTCAGATGCTACACTACTGTAATATTACTATAA
ATTTGCTCCTGAAATTAATGGTGTACATTTTTTTCAACAAGTTTGTATTT
ATAGTAATGAAAAGAGAAAAAAATGCAATAGTATTTGAGTAAGTGATGGG
GCAAAAACTCAGGGATACTCATTATTTTAAGGGTGGTTAGTTACTGCGAT
TCAGGAAGAAAGTGCTTAGAATTGGATAAGTTGTACTTATTTCGATTACA
GGTGTGACATATTTCCTATATGTACCTCTATTTGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_n10.g1 MSMg01no088_n10.g1 CHROMAT_FILE:
MSMg01no088_n10.g1 PHD_FILE: MSMg01no088_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:27 2005
         (522 letters)



>mm_chr6_20444545_20445465
          Length = 921

 Score =  971 bits (502), Expect = 0.0
 Identities = 517/522 (99%), Gaps = 1/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccaatcacatgactggaagaccttctttgtagtcattgacttcaaaacccaagactat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccaatcacattactggaagaccttctttgtagtcattgacttcaaaacccaagactat 260

                                                                       
Query: 61  tccatgaggattaaatttttgtactttgagaatggtgaatgctatttcccaaagcctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatgaggattaaatttttgtactttgagaatggtgaatgctatttcccaaagcctaaa 320

                                                                       
Query: 121 gatcactatgtacacactttttattatttattattaagtagagtatatcataaacagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcactatgtacacactttttattatttattattaagtagagtatatcataaacagaaa 380

                                                                       
Query: 181 tgtgctggtaatatgaaatcatgttttggcaatgtacagatgccaaaattaaacaattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgctggtaatatgaaatcatgttttggcaatgtacagatgccaaaattaaacaattaa 440

                                                                       
Query: 241 aatgtatactataaatggtagcaatttaaactaaatatggaaagaaatagtgcacattta 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtatacaataaatggtagcaatttaaactaaatatggaaagaaatagtgcacattta 500

                                                                       
Query: 301 ctgagaattaaaccaatagatttataaaccaatacttcaatattttcagatgctacacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagaattaaaccaatagatttataaaccaatacttcaatattttcagatgctacacta 560

                                                                       
Query: 361 ctgtaatattactataaatttgctcctgaaattaatggtgtacatttttttcaacaagtt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 ctgtaatattactataaatttgctcctgaaattaatggtgtacatttttttccacaagtt 620

                                                                       
Query: 421 tgtatttatagtaatgaaaagagaaaaaaatgcaatagtatttgagtaagtgatggggca 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 621 tgtatttatagtaatgaaaagagaaaaaa-tgcaatagtatttgagtaagtaatggggca 679

                                                     
Query: 481 aaaactcagggatactcattattttaagggtggttagttact 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaactcagggatactcattattttaagggtggttagttact 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 921
Length adjustment: 10
Effective length of query: 512
Effective length of database: 911
Effective search space:   466432
Effective search space used:   466432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)