BAC Information

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BAC

Clone NameMSMg01-089D14
Chromosome6 (Build37)
Map Location 30,173,666 - 30,173,950
singlet/doubletsinglet
Overlap geneUbe2h
Upstream gene2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
Downstream geneZc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089D14.T7 (MSMg01no089_d14.b1)MSMg01-089D14.TJ (MSMg01no089_d14.g1)
ACCAG307777AG307778
length665689
length of high quality
(start - end)
426 (47 - 472)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no089_d14.b1 PHD_FILE: MSMg01no089_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:57 2005CHROMAT_FILE: MSMg01no089_d14.g1 PHD_FILE: MSMg01no089_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCCTATATCGAGAGGATCCGCGGAATTCACAATCTTTCCAAGCCCGC
AGTGCCCAGGAACTTTTTAGCTTGTTTTGCACTGGTCAGTGGAGGAGTAC
GAAACACAGTCTCTTTTTCTAGCTGCTTCAACAGGTAGGCCACCGGACTC
TTCTAAGGACTCAGCTTCTGTATTAGCACCCCTTTTGTTATTTCTTAAAC
ACATTGATCTTCAGCCAAAAGCTTTCTTTTGTTGCCAGGTACTATCTAAG
TTTTCTAATTTTCCTGACTTTTGTGACCAGCATTTTATTTTTCTTATCTC
TTTGTCTCACAGCACAGTTCTGATTCTGACTCTGGTCTCTGTCTTTGCCA
GCCTCATGTTTCTTTAACTCTTTTTCTTGTCTGACTCTTATACCCTGTCC
TTTTAACTTCTTGTTACCTTGGTCAGATTGTTGGGACTTTCTAGTCCCAC
AGAGACGAGACCCCCATCAGAGTCTGCCAGTTAGACTCACAGGTGCTCCT
TACCTTGGACAGAAGCCCCAAGCGGTTGGATGCCTCTCTCACTGGATGTT
AAAACAGACTCACTGTCAGCAACTCAAGGTGGTGCCACCTTCTGAGATGA
GGAAACTTTACAGCATAAACGTGAGCGCAGCTCTCCCAGCTGGTTGCCAC
CAATACTTAACTTAC
ACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTAGCCTTGAA
CTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATATAAGGCGTG
TGCCACCACGCCCAGCTATAAATAAATCTTAAAAAAAAATAAAAAGATAT
AATGAAGTTCAATTATTCAAGACAAGGGCAGAAACATATACAAGCCAGTT
ATAAATGACTGAGACAGATAGGCAAGCTACTCTTCTAGTAGGGATGTGAT
TCCATCCTCAGTGCCTGTTTATAAGTGGGCCTCAGCACTCTTCCTACTTC
AACCACCTGTTTTATTTTTCCCCCCCTCTCTAGAGGGAGCACTGAAGTAA
GCACTCCTCCCTCTTTACCCCCTTGAAAAATAACGAATTTGGGCTGCTGT
TAGAATGACTAATTACTGTTACTGGTGGATGCCTAGCCCGTGAACCCCTA
GGTAATGAGTATATGGAAACATTGTGCCCCATCCAACAGGCGGGATGCTA
CTGATATCTACCGGTTGCTAGATGCTAATTACTACCAGAGAAGCCATTAA
ATGGTCTACACCGCGCTGCTATAAGGCTCAAACACTTACAGCCTTGGTTG
TTCTTTCAAAAACCCAGTGTCCATTCCCAAGCACCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_d14.g1 MSMg01no089_d14.g1 CHROMAT_FILE:
MSMg01no089_d14.g1 PHD_FILE: MSMg01no089_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:57 2005
         (287 letters)



>mm_chr6_30173465_30174151
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggctagccttgaactcagaaatccgcctgcctctgcctcccaagtgc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 202 actttgtagaccaggctagcctcgaactcagaaatccgcctgcctctgcctcccaagtgc 261

                                                                       
Query: 61  tgggatataaggcgtgtgccaccacgcccagctataaataaatcttaaaaaaaaataaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 262 tgggatataaggcgtgtgccaccacgcccagctataaataaatcttaaaaaaaa-taaaa 320

                                                                       
Query: 121 agatataatgaagttcaattattcaagacaagggcagaaacatatacaagccagttataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatataatgaagttcaattattcaagacaagggcagaaacatatacaagccagttataa 380

                                                                       
Query: 181 atgactgagacagataggcaagctactcttctagtagggatgtgattccatcctcagtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgactgagacagataggcaagctactcttctagtagggatgtgattccatcctcagtgc 440

                                                         
Query: 241 ctgtttataagtgggcctcagcactcttcctacttcaaccacctgt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtttataagtgggcctcagcactcttcctacttcaaccacctgt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)