Query= MSMg01no089_g16.b1 MSMg01no089_g16.b1 CHROMAT_FILE:
MSMg01no089_g16.b1 PHD_FILE: MSMg01no089_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:13 2005
(542 letters)
>mm_chr6_72837224_72838165
Length = 942
Score = 1006 bits (520), Expect = 0.0
Identities = 535/540 (99%), Gaps = 3/540 (0%)
Strand = Plus / Minus
Query: 5 gaattcagaagaa-atcagttgtttctaatggaagctgagttttcagccttgagattaag 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaattcagaagaagataagttgtttctaatggaagctgagttttcagccttgagattaag 721
Query: 64 atgacctctctaggcttagtaatttattataagtggtattatcattattattgatttggt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atgacctctctaggcttagtaatttattataagtggtattatcattattattgatttggt 661
Query: 124 ttcttttgagacagagtctctctatgtaaactaaacctagctgttctggttctctatata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttcttttgagacagagtctctctatgtaaactaaacctagctgttctggttctctatata 601
Query: 184 gaccaggttagaccaggttagcttacagagatgcctatctctggctcccaagtgctgtct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaccaggttagaccaggttagcttacagagatgcctatctctggctcccaagtgctgtct 541
Query: 244 gtctgtctgtgtgtttaatacttgctatcaattacagaccctgtcctaaaattcaggcct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtctgtctgtgtgtttaatacttgctatcaattacagaccctgtcctaaaattcaggcct 481
Query: 304 tgaggatggagcacagtgata-acatgcatgccacgcagctcagaagacagttctcccct 362
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct: 480 tgaggatggagcacagtgataga-atgtatgccacgcagctcagaagacagttctcccct 422
Query: 363 ttcactgtgtgggtcctggggattgaacttgggcatctggcttggtgtcaggtgccttaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcactgtgtgggtcctggggattgaacttgggcatctggcttggtgtcaggtgccttaa 362
Query: 423 cactggttgtatctgttagaaactcaagacttgatgtttcctgcctgttttactgaagaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cactggttgtatctgttagaaactcaagacttgatgtttcctgcctgttttactgaagaa 302
Query: 483 acctttctgctgagcagctggtatccccagattcatccttttcagttctgccccatcaga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acctttctgctgagcagctggtatccccagattcatccttttcagttctgccccatcaga 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_g16.g1 MSMg01no089_g16.g1 CHROMAT_FILE:
MSMg01no089_g16.g1 PHD_FILE: MSMg01no089_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:13 2005
(604 letters)
>mm_chr6_72787561_72788563
Length = 1003
Score = 1085 bits (561), Expect = 0.0
Identities = 592/603 (98%), Gaps = 3/603 (0%)
Strand = Plus / Plus
Query: 1 cagaa-aactaacacttactgtgaaggtgagcacacagtaacaatgctgtcttcatgtat 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaacaactaacacttactgtgaaggtgagcacacagtaacaatgctgtcttcatgtat 260
Query: 60 gttaccgcagcaatgtaaagcccaagcacacatgaagcctagagcccttccctctccttc 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gttaccgcagcaatgtaaagcccaagcacacatgaagcctagagctcttccctctccttc 320
Query: 120 ccagccaggagcctgtaatttcctaggaatgtcacaagaaatgaatctgtagcaaaagcc 179
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 321 ccagccgggagcctgtaatttcctaggaatatcacaagaaatgaatctgtagcaaaagac 380
Query: 180 atgtcttaagtctcttgggacttctatgactcgtggttttctgcctataatcagagcaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtcttaagtctcttgggacttctatgactcgtggttttctgcctataatcagagcaaa 440
Query: 240 ggcacctctagagccacatccatatataaaaaacaagcaggtgggtttcctagtaaccct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcacctctagagccacatccatatataaaaaacaagcaggtgggtttcctagtaaccct 500
Query: 300 tgacatgtgacttaagagctgttttgtagacacttaagtgtgacaacacttggagttgtt 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagatgtgacttaagagctgttttgtagacacttaagtgtgacaacacttggagttgtt 560
Query: 360 gagcagttcacacctacacctgcatgcgccttgctctttccttgagaacgtattaagttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcagttcacacctacacctgcatgcgccttgctctttccttgagaacgtattaagttt 620
Query: 420 tacacttaaatctgtcaaactctaatattaaataccaactctgcttcacactgttttatc 479
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 621 tacacttaaatctgtcaaactctaatattaaataccaactctgcttcac--tgttttgtc 678
Query: 480 ccaacattgttttctgtgctgtcgagaatcttgacttcaaccaggctggaggcttcacta 539
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 679 ccgacattgttttctgtgctgtcgagaatcttgacttaaaccaggctggaggcttcacta 738
Query: 540 gagtggtctctggaagaattccttaggctgcggtaggcagtgcatggaattctatccgca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gagtggtctctggaagaattccttaggctgcggtaggcagtgcatggaattctatccgca 798
Query: 600 gcc 602
|||
Sbjct: 799 gcc 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space: 589842
Effective search space used: 589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
