Query= MSMg01no089_j12.b1 MSMg01no089_j12.b1 CHROMAT_FILE:
MSMg01no089_j12.b1 PHD_FILE: MSMg01no089_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:27 2005
(318 letters)
>mm_chr6_114202894_114203611
Length = 718
Score = 536 bits (277), Expect = e-157
Identities = 305/315 (96%), Gaps = 4/315 (1%)
Strand = Plus / Plus
Query: 6 ggaattctgctctg-ccccaagatgccagcaaccaagcaggacctgtcttttgtgtcaca 64
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcagctctgcccccaagatgccagcaaccaagcaggacctgtcttttgtgtcaca 265
Query: 65 ggcaggacccttcctctggtgacagcatttatgggcattgtagctatttctagattgagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 266 ggcaggacccttcctctggtgacagcatttatgggcattgtagctatttctagattgtgg 325
Query: 125 cttctcacagctattggaggagaaagggaagaagccttcatcaatggctagcctgtttta 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 326 cttctcacagctattggaggagaaagggaagaaaccttcatcaatggctagcctgtttta 385
Query: 185 tctacagat-aaaccaacattccccccaccccacccccttatccactgagggcatggggt 243
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 386 tctacagataaaaccaacattccccc--ccccacccccttatccactgagggcatggggt 443
Query: 244 tactaaccagtaactagatggagaaactgagtgttgaggtttgcaccaccgactgccttg 303
||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 tactaaccagtgactagatagagaaactgagtgttaaggtttgcaccaccgactgccttg 503
Query: 304 caatcctgttctctt 318
|||||||||||||||
Sbjct: 504 caatcctgttctctt 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_j12.g1 MSMg01no089_j12.g1 CHROMAT_FILE:
MSMg01no089_j12.g1 PHD_FILE: MSMg01no089_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:27 2005
(286 letters)
>mm_chr6_114371432_114372117
Length = 686
Score = 528 bits (273), Expect = e-154
Identities = 282/285 (98%)
Strand = Plus / Minus
Query: 1 tttagccctgagcacaggaagaggggcagagtacctaggaagccctgtgagtcagacgag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 485 tttagccctgagcacaggaagaggggcagagtacctaggaagccctgtgagtcagatgag 426
Query: 61 ggaggatcatgcatacacgcgcatacacaaacaaatgtgcctctgggttggtccagccta 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggaggatcatgcattcacgcgcatacacaaacaaatgtgcctctgggttggtccagccta 366
Query: 121 agtttctctccatgtgtgtctggaactctgggtacaggtaagtctagaccccaggcagag 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agtttctctccatctgtgtctggaactctgggtacaggtaagtctagaccccaggcagag 306
Query: 181 ctgaaagctcaaaagtcctcagcctgagtgcaccttccctgcaacctggggcagctccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctgaaagctcaaaagtcctcagcctgagtgcaccttccctgcaacctggggcagctccca 246
Query: 241 cttcagacactacccagtatcctgcttctgcctgaaggtcacttt 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cttcagacactacccagtatcctgcttctgcctgaaggtcacttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
