BAC Information

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BAC

Clone NameMSMg01-089J21
Chromosome6 (Build37)
Map Location 50,213,645 - 50,214,054
singlet/doubletsinglet
Overlap genenone
Upstream geneTra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681
Downstream geneOsbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089J21.T7 (MSMg01no089_j21.b1)MSMg01-089J21.TJ (MSMg01no089_j21.g1)
ACCAG308069AG308070
length771698
length of high quality
(start - end)
73 (114 - 186)410 (72 - 481)
definitionCHROMAT_FILE: MSMg01no089_j21.b1 PHD_FILE: MSMg01no089_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:28 2005CHROMAT_FILE: MSMg01no089_j21.g1 PHD_FILE: MSMg01no089_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNCCCCCCCCNN
TTTTAACCCGATTTNNTATTTCTATAAXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCACTGGTTTTACCATGTTCCCCATCATC
CTGAAACAGTTGGTCTGATAGAAAGATGAAATGGCCTTCTCGCAATACAC
AGTTACAGCGCTAATTAGGTGGCAATAGCATGGAGGTATGGGACAGAGTT
CTTCAGAAGGCAGTATATGTTTTGAATCAATGTCTGATATATGGTATAGA
TTCCCCCATAGCCAGGATCCATAGGTCCAGGAATTAAAGGAGAAAAGGGA
ATAGTTCCTCTCACTATCACTCCTAGTGACCCTCTTGGAAAATTTTTGCT
TCCTGACCGGGTAACTCTAGGTTCTGCTTTTCTTTACCCCCCCCCCCCCG
AGAAGGGAGTGCTCCTACCAGGAGCCTCAACATACCTTCCATTGAACTGG
AAGCTCAGATTTCCCCCTGGTCATTTTGGGCTGCTAATGCCCTTAAATCA
TCTGGCTAACATAGGAATAACAGTGTTAGGAGGGGTGATAGATCCAGATT
ACCATGGGGAAGCTTGGATTGCCTCTCCTCTATGGAGGTAAACAGTATAA
CGTCTGGGGTGCAAGGCATCTAATGCTACGGAGCCTCTTACTACTACCAT
GTCCCGTGATTAAAGTCCTTGGGATACTACTTCAGCCTAACCTTGCCAAT
TGATTAAGTAACTTGACCCTT
GATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGAGTCTGGGTAAGTTATAAAGAACAGA
TTTTATTTCTTTCAGCTTTGGAGGCTGAGGAGTCCGTGGTCAAGGTGTGT
TAGATAACCCTCTTGCTCAGTCATCCCCAGACTGAAGGGAGAAGGGAAGG
AACAGCTGGGAAGGAGGGTTGCCAAGCTCCTTTGGTCGGAACCAGTTTCT
ACGACGACCAACCCACTTCCTTGTCAACAATGTCTCAGAGGGCAGAGCCT
TTGTGTAATAGCCCTCTTATCAGTGCCCCTCTCAGCACTGTGATGGACTT
GGACTCTGGGGAACAAACCATAGCATCAGCCAAGAAACTGACAAAATAGA
TCGTAAAACTCTTGACCAGGCTAAAACACTGGTTTTTCTTTTCTGCTGGC
CTGGGTCCTGGGGGTATCCAGGCAGCTGGTTGGGTAGGTTTATCCAGAGA
TGGCTTTCAGCAGAACAGTGCTCCTTTATTGGGGGCAACAAGGGCTGTAG
GAACGCTGGGCAGTGGGTAGGGGCTTTTGAGATGGCTGCCTATCCTTGGC
TGGCACTGAGGCACTATGAATGCCTCATTTGCCTGTAGAGGAATTCCCGG
AGCTTGCTGGCCTCTATCTTACGGGCAGAGAGGGAAGTCAACCGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_j21.g1 MSMg01no089_j21.g1 CHROMAT_FILE:
MSMg01no089_j21.g1 PHD_FILE: MSMg01no089_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:29 2005
         (410 letters)



>mm_chr6_50213369_50214178
          Length = 810

 Score =  777 bits (402), Expect = 0.0
 Identities = 408/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagtctgggtaagttataaagaacagattttatttctttcagctttggaggctgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctgagtctgggtaagttataaagaacagattttatttctttcagctttggaggctgagga 627

                                                                       
Query: 61  gtccgtggtcaaggtgtgttagataaccctcttgctcagtcatccccagactgaagggag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gttcgtggtcaaggtgtgttagataaccctcttgctcagtcatccccagactgaagggag 567

                                                                       
Query: 121 aagggaaggaacagctgggaaggagggttgccaagctcctttggtcggaaccagtttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aagggaaggaacagctgggaaggagggttgccaagctcctttggtcggaaccagtttcta 507

                                                                       
Query: 181 cgacgaccaacccacttccttgtcaacaatgtctcagagggcagagcctttgtgtaatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cgacgaccaacccacttccttgtcaacaatgtctcagagggcagagcctttgtgtaatag 447

                                                                       
Query: 241 ccctcttatcagtgcccctctcagcactgtgatggacttggactctggggaacaaaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccctcttatcagtgcccctctcagcactgtgatggacttggactctggggaacaaaccat 387

                                                                       
Query: 301 agcatcagccaagaaactgacaaaatagatcgtaaaactcttgaccaggctaaaacactg 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agcatcagccaagaaaccgacaaaatagatcgtaaaactcttgaccaggctaaaacactg 327

                                                             
Query: 361 gtttttcttttctgctggcctgggtcctgggggtatccaggcagctggtt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtttttcttttctgctggcctgggtcctgggggtatccaggcagctggtt 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)