BAC Information

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BAC

Clone NameMSMg01-089J23
Chromosome6 (Build37)
Map Location 111,400,749 - 111,552,883
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089J23.T7 (MSMg01no089_j23.b1)MSMg01-089J23.TJ (MSMg01no089_j23.g1)
ACCAG308073AG308074
length771690
length of high quality
(start - end)
287 (132 - 418)509 (71 - 579)
definitionCHROMAT_FILE: MSMg01no089_j23.b1 PHD_FILE: MSMg01no089_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:29 2005CHROMAT_FILE: MSMg01no089_j23.g1 PHD_FILE: MSMg01no089_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,400,749 - 111,401,035)(111,552,375 - 111,552,883)
sequence
NNNTTTTTTNNNNNNNNNCCNTTTTTTTTNTCCCCCNNCNNTTCTTCACA
TTTTNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACAGCGTTTCATACACATTATATATTTACAATATAC
ATACCTTAAATTGTGTGTTATGTGTTCACGTCCGTATGAAGTGAATGCAG
GTGTACGTACCCTTGTATGGGTATGAGGGTAAAAAGACAATAATGAGGGC
TTGACTTTGCCTCCGACCTCATTTGAGAGAGGGTTCTTTAGTTACTACAT
CAAGCTTCCGGTCCACAAGCTTCTGATTCCGAGGCATTCCCTGCCTCTGC
TTTGTCATCTCACTATAGGAACACAGGGATTGAGTTGTGCGCTACTGTGG
ATAGCGTTATGTGGGTTCTGTGTACCTGAGCACAAGTCCTCAGGCTTGAG
CAGTAAGCAGTTTACCTCCTGACCATCTCTTTGGTCTCATATATACTTTC
GATTTCCGTTCATCTTCACACTGTATGTTATCTAATTTTAAATTTCTCCC
TGACAAGCACTTAATAACAAATAGACCAGCCTGATTATCATATTTTTTTA
ATTAAAATTCTTTGCTTTTCCACAAAATAAGTAACTCTGATTTACAGATT
CAAGTATGAAGATCTTATTTTAAGAATAAGACCATATATTCCTGAACCAC
CCCAGAGTACCAGAAATTTGCGGTTACAGTGTTTTCCTCAGTGCAAATTT
TTGACAGTCAAAGTTATTTTC
GATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTGCGAAAATCAAATGCAGACATGCAAACTCGTGAGAACAAG
AACAAGGTGCTGTAGGAGCACCTGTGCCAGTGTTTACTTTGTGTCTCCCG
TGACAGTTTTTTCTTCTCTGCTCTCTTTGTCACAAAGTAGGCAACACAGG
AGTAAGCTATACAGTCCCGTTGTCATCCTCAGCACACTGGCTGATGAAGA
TTTGTACTTGGAAGGAATGTTTAATAAAATTGATTCTGTTTTTGTTTTCT
GTCTTCCTTATCTTTCTAGTTTCTGGTTTTTGTTTGGGACACCTAGGCAG
CTGTGGAGGAAAATAAGTTGAAAAACCACAGTCATGAAAGGCTTGGGGGA
CATTATACTGTGTAGCAAACACCACATCACTTTTTGTCACTGGCTCATCC
CTGCTGGTGACAGTGCAGCAGACTGTTCTGCTGTGAGCTGGTTCTTTGGT
GTTGAGCCAAGGACAAATCTGGGCCCATCACAGTTGTTCCCTGGAGTGTC
TCAATACTTCTTATGAGAAAGGAAAACAAAGATAGATAGGACTCACTTTG
CTTGGGGGGTGGGGGTTCAGGTTCAAGTCTCTTTTATTTTGATTTATGTG
TGTCACTTCCACCTGCCTGTTTGAATTGAAAGGGNCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_j23.b1 MSMg01no089_j23.b1 CHROMAT_FILE:
MSMg01no089_j23.b1 PHD_FILE: MSMg01no089_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:29 2005
         (287 letters)



>mm_chr6_111400549_111401235
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatatatttacaatatacataccttaaattgtgtgttatgtgttcacgtccgtatgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 ttatatatttacaatatacataccttaaattgtgtgttatgtgttcacgttagtatgaag 260

                                                                       
Query: 61  tgaatgcaggtgtacgtacccttgtatgggtatgagggtaaaaagacaataatgagggct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgaatgcaggtgtacgtacccttgtatgggtatgagggtaaaaagacaataaggagggct 320

                                                                       
Query: 121 tgactttgcctccgacctcatttgagagagggttctttagttactacatcaagcttccgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgactttgcctccgacctcatttgagagagggttctttagttactacatcaagcttccgg 380

                                                                       
Query: 181 tccacaagcttctgattccgaggcattccctgcctctgctttgtcatctcactataggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccacaagcttctgattccgaggcattccctgcctctgctttgtcatctcactataggaa 440

                                                          
Query: 241 cacagggattgagttgtgcgctactgtggatagcgttatgtgggttc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagggattgagttgtgcgctactgtggatagcgttatgtgggttc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no089_j23.g1 MSMg01no089_j23.g1 CHROMAT_FILE:
MSMg01no089_j23.g1 PHD_FILE: MSMg01no089_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:29 2005
         (509 letters)



>mm_chr6_111552175_111553083
          Length = 909

 Score =  930 bits (481), Expect = 0.0
 Identities = 502/509 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgcagacatgcaaactcgtgagaacaagaacaaggtgctgtaggagcacctgtgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aatgcagacatgcaaactcgtgagaacaagaacaaggtgctgtaggagcacctgtgccag 650

                                                                       
Query: 61  tgtttactttgtgtctcccgtgacagttttttcttctctgctctctttgtcacaaagtag 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 649 tgtttactttgtgtctcccgtgacagttttctcttctctgctctctttgtcaccaagtag 590

                                                                       
Query: 121 gcaacacaggagtaagctatacagtcccgttgtcatcctcagcacactggctgatgaaga 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 589 gcaacacaggagtaagctatacactcccgttgtcatcctcagcacactggctgatgaaga 530

                                                                       
Query: 181 tttgtacttggaaggaatgtttaataaaattgattctgtttttgttttctgtcttcctta 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 529 tttgtacttggaaggaatgtttaataaaattgattgtgtttttgttttctgtcttcctta 470

                                                                       
Query: 241 tctttctagtttctggtttttgtttgggacacctaggcagctgtggaggaaaataagttg 300
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tctttctaggttcaggtttttgtttgggacacctaggcagctgtggaggaaaataagttg 410

                                                                       
Query: 301 aaaaaccacagtcatgaaaggcttgggggacattatactgtgtagcaaacaccacatcac 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 409 aaaaaccacagtcatgaaaggcttgggggacattatactgtgtaggaaacaccacatcac 350

                                                                       
Query: 361 tttttgtcactggctcatccctgctggtgacagtgcagcagactgttctgctgtgagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tttttgtcactggctcatccctgctggtgacagtgcagcagactgttctgctgtgagctg 290

                                                                       
Query: 421 gttctttggtgttgagccaaggacaaatctgggcccatcacagttgttccctggagtgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gttctttggtgttgagccaaggacaaatctgggcccatcacagttgttccctggagtgtc 230

                                        
Query: 481 tcaatacttcttatgagaaaggaaaacaa 509
           |||||||||||||||||||||||||||||
Sbjct: 229 tcaatacttcttatgagaaaggaaaacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)