Query= MSMg01no089_m21.b1 MSMg01no089_m21.b1 CHROMAT_FILE:
MSMg01no089_m21.b1 PHD_FILE: MSMg01no089_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:44 2005
(367 letters)
>mm_chr6_14785426_14786195
Length = 770
Score = 627 bits (324), Expect = 0.0
Identities = 353/364 (96%), Gaps = 3/364 (0%)
Strand = Plus / Plus
Query: 7 gaattcactaggaatgttccactaactctcagttttatgattttatatagatctgtaagt 66
|||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 207 gaattcactaggaaggttagactaactctcagttttatgattttatatagatccataagt 266
Query: 67 tgcccctcaatgcccagatatagtaaaagccaaaaaa---gggggctttgagattcccat 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 267 tgcccctcaatgcccagatatagtaaaagccaaaaaaagggggggctttgagattcccat 326
Query: 124 gtccccagtgcctgcactgatatgttatcgcatctgatactaaggagttcatgaagcaat 183
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 327 gttcccagtgcctgcactgatatgttatcgaatctgatactaaggagttcatgaagcaat 386
Query: 184 tgtgtttttgactgataaatgctaaacccataaagactaaatagagaaatatctagtgct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgtgtttttgactgataaatgctaaacccataaagactaaatagagaaatatctagtgct 446
Query: 244 ccatagaataaaggttcaagtccttttcctaaagcaggtcttgtccccatatctgtgatt 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccatggaataaaggttcaagtccttttcctaaagcaggtcttgtccccatatctgtgatt 506
Query: 304 gactaaagtgtttttgaggccccagggtcttaaggaaatacattagaaatctccatgaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gactaaagtgtttttgaggccccagggtcttaaggaaatacattagaaatctccatgaat 566
Query: 364 ggat 367
||||
Sbjct: 567 ggat 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 770
Length adjustment: 9
Effective length of query: 358
Effective length of database: 761
Effective search space: 272438
Effective search space used: 272438
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_m21.g1 MSMg01no089_m21.g1 CHROMAT_FILE:
MSMg01no089_m21.g1 PHD_FILE: MSMg01no089_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:44 2005
(531 letters)
>mm_chr6_14953996_14954926
Length = 931
Score = 949 bits (491), Expect = 0.0
Identities = 521/531 (98%)
Strand = Plus / Minus
Query: 1 caattcccataaacatgctcaaaaatattaatggtctatcgccctgaagataaataacaa 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 caattcccataaacatgcttaaaaatattaatggtctatcgccctgaagataaataacaa 672
Query: 61 tgtggccatattttattttgattattcactatttttctttaaatgtaataatcgtgtacc 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 671 tgtggccatattttattttgattattcactatttttctttaagtgtaataatcgtgtacc 612
Query: 121 taattagtcaaaatcatctcctataataaaggttcagaatatgagaatggccctctccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taattagtcaaaatcatctcctataataaaggttcagaatatgagaatggccctctccaa 552
Query: 181 ataaagtcttcacattgcttcctgcagacctgctaagaatgaaagaccaaggcaagagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ataaagtcttcacattgcttcctgcagacctgctaagaatgaaagaccaaggcaagagac 492
Query: 241 aaaaattcaccttgaattgaaatataaatagagaacttatttgtctgaaaagaacatcaa 300
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 491 aaaaattcaccttgaattgaaatataaattgagaacttatttgtctggaaagaacatcaa 432
Query: 301 attgttttcaattagtgaatgttttattaaattcagaccatatcagcaccactccagtat 360
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 431 attgttttcaattagtgaatgttttattaaattcagaccatatcagtattactccagtat 372
Query: 361 tggtgttatggtttcaaaatgaacgtgataatttcacagttaggagagttgggaaataag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 371 tggtgttatggtttcaaaatgaacgtgataatttcacagttaggagagttgggaaatgag 312
Query: 421 atgactccttatgaagctgatttgtttaatctaatgaacataagttatttttagataaga 480
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 311 atgactccttatgaagttgatttgtttaatctaatgaaaataagttatttttagataaga 252
Query: 481 atatacaaatacattaaaacatcacaatgattgccattaaccttgatatgg 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atatacaaatacattaaaacatcacaatgattgccattaaccttgatatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
