BAC Information

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BAC

Clone NameMSMg01-090A06
Chromosome6 (Build37)
Map Location 16,658,212 - 16,658,529
singlet/doubletsinglet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090A06.T7 (MSMg01no090_a06.b1)MSMg01-090A06.TJ (MSMg01no090_a06.g1)
ACCAG308360AG308361
length744874
length of high quality
(start - end)
332 (39 - 370)162 (67 - 228)
definitionCHROMAT_FILE: MSMg01no090_a06.b1 PHD_FILE: MSMg01no090_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:02 2005CHROMAT_FILE: MSMg01no090_a06.g1 PHD_FILE: MSMg01no090_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TTGTCATTGCTGAAACTAGACCTTCCCAAAGCAGCAAGAATCTCGCTTAG
GTCTTCATCATCTTAACAGATTTCTTTTATCCTTTCTCTCTTCATTCTTA
GTCCTACCCGAATGTTACGCTTGCCTTCATGACCAAACTGCAATGTGAAT
GTGGGGTTTTTTTTAGTTAATATCAAATTCATCAAGAAATTAGAGCAGGT
CTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTGCACCATACTATTCTGGC
ACCAATGGGTCAAGTTGGCCAGGATAATTGGGATACACTGTTTCGGTGGA
TGTGGAAGTAGCAAGTTCTCAGAGTTACATTTTAATTATTTATTTATCTG
TGTGCTAAACATGCTTGAACGTATGCATGAAACCTGTTCATGAAAGCTCA
GGGACAAGAGTCAGGAATTGGTTCCTTCTCCCCATCACATGGTTTTCAGG
GTAGGAACCTCATGTTTGGCATGGTTGCCAACACCATTTACCCCCTGAAG
CCATCTCAAGAACCTAAATTTTCTTTCAAACTGGGAATATTTCCCTGAAC
TGGTACAGGAAGAGAAATGTCCTATGTCAAAGGTTGGTTTCCCTAATCTC
ATTCTTTCAAAGACGCCTGCTTTAATGGCAAAATTTCTGGTCTCGGTGGC
TACTACCCCTCCCTCCTTAATTGCTTATTCTGCTATAACGTGTA
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTATTTAGCTCTGAGCCCCATTTTTAATGGGGT
TATTTGATTTTCTGTAGTCCACCTTTCTTGAGTTCTTTATATATANNTAG
GATATTAGTCCCCNTATCTGATTNTGGGATAGGTAAATATCCTTTTCCCA
ATCTGGTTGGTGGCCTTCTTTGTCTTATATGACGGTCGCTNCATTTTTTG
TCTCTTTTACTAGGAAAAGCCTCTTCTGTCAAATATTTTTTAATGGAACC
GGCCCCCCCAATTTTGTCCGATTTCTTCGATCTTACAGCACAAGCCATTG
CCAGGTTTTATTTAAGGATATTTTTCCCCCCGGGGGCCCCTATACCTTTT
GGTGAAGATATCCTCCTCTCTTTATATATGTGGTTTTCCCTACTCTCCCT
CCCGGCGTTCTTTTTCTCGTGGCGGGTCCTCTTTTCTTTTTTGCCNCNNN
NTTGGTGATNTTNNNNNNNNNTACNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCNNNNGGTGAGGGGGNNNCCCNNNNCCCCCACCATAAAGGCTGT
AAGATGTGNNNNNNNNNAATATTGCATGAGNNNNNTAGTTGTNNNTTGNN
NNNNNTTGGCCGTTCGGGGGGGTGGGNNNATNNNNNNNNATGTGCATTGG
GCGCTCCTTTCGGGTGGGGCNCNNCTNNNNNNNNTACTCNGCTCTATTCT
CCNTNNNNNNNNCCCNNNNATCAGTCTCCACNNNNNNNATAAANNNNNNN
NTNNNTCTTTTCGGTGTTCTNNNNNNNNCTCTCCTTTTTCCCNNCCCTCC
TCACTANTTTATTTTATGCATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_a06.b1 MSMg01no090_a06.b1 CHROMAT_FILE:
MSMg01no090_a06.b1 PHD_FILE: MSMg01no090_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:02 2005
         (332 letters)



>mm_chr6_16658008_16658744
          Length = 737

 Score =  528 bits (273), Expect = e-154
 Identities = 309/333 (92%), Gaps = 20/333 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttgtcattgctgaaactagaccttcccaaagcagcaagaatctcgcttaggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttgtcattgctgaaactagaccttcccaaagcagcaagaatctcgcttaggt 264

                                                                       
Query: 65  cttcatcatcttaacagatttcttttatcctttctctcttcattcttagtcctacccgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcatcatcttaacagatttcttttatcctttctctcttcattcttagtcctacccgaa 324

                                                                       
Query: 125 tgttacgcttgccttcatgaccaaactgcaatgtgaatgtggggtttttttt-----agt 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||     |||
Sbjct: 325 tgttacgcttgccttcatgaccaaactgcaatgtgaatgtgggttttttttttttttagt 384

                                                                       
Query: 180 taatatcaaattcatcaagaaattagagcaggtctaaaaaaaaaaaaaaaaaaaaaaaaa 239
           |||||||||||||||||||||||||||||||||||| |||||||||              
Sbjct: 385 taatatcaaattcatcaagaaattagagcaggtctacaaaaaaaaa-------------- 430

                                                                       
Query: 240 aggctgcaccatactattctggcaccaatgggtcaagttggccaggataattgggataca 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 -ggctgcaccatactattctggcaccaatgggtcaagttggccaggataattgggataca 489

                                            
Query: 300 ctgtttcggtggatgtggaagtagcaagttctc 332
           ||||| |||||||||||||||||||| ||||||
Sbjct: 490 ctgttgcggtggatgtggaagtagcatgttctc 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 737
Length adjustment: 9
Effective length of query: 323
Effective length of database: 728
Effective search space:   235144
Effective search space used:   235144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)