BAC Information

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BAC

Clone NameMSMg01-091K21
Chromosome6 (Build37)
Map Location 7,913,781 - 7,914,015
singlet/doubletsinglet
Overlap genenone
Upstream geneAcn9, EG667500, Tac1, LOC667511, Asns, EG667529, C1galt1
Downstream geneLOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091K21.T7 (MSMg01no091_k21.b1)MSMg01-091K21.TJ (MSMg01no091_k21.g1)
ACCAG309564AG309565
length697724
length of high quality
(start - end)
554 (42 - 595)238 (127 - 364)
definitionCHROMAT_FILE: MSMg01no091_k21.b1 PHD_FILE: MSMg01no091_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:16 2005CHROMAT_FILE: MSMg01no091_k21.g1 PHD_FILE: MSMg01no091_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAGTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTCCCTATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTT
CAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATACTAGTACCATGCAGTTTTTATTCACCATTGCCCTG
GAATTAAGCTTTATGGCCAGCTTGGTGATTCCCCCAGCCTTTCTGAT
ATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCCTATGGTTTATGAAGGAGAAGAAGAA
TGTTGCATTCGAGGCACTTCCGCCCGGAAACTGCCGACATGACTGCTCCA
TTATTAGGGAACATTTTAATTGTGCATAAGAGAGAGAACATCAAGAGGCA
TCTGGAACGCTCTAGAGTAGAGATGCTAAAGTAGACTGAACATGGCCAGG
TCTAGGGAAGTGTGAGAGTGGTAGAGAATAGAGACAACCAGAGACAGCAT
AGTCAGACAAGCTGGAGACAATGAGAACAAGAGAGACTAGGTGTTGGGAT
GGTAAAATATTGATTTTTTTTGCCCCCCCCCCCACCCGTGGGACAAGAAG
AGTCCAGAGACTGATGCGCATGCGTATGTAAAAAAAAAAGAGTGGGAGGG
GGAGGTGCCTCCCTCTTCTTTCCATCTCTCTTCTTCACCCAATCCTATTC
ATCTCTTACTTGTTTTCGCTTCTAATACTTTCCCTCCGTATCCCCTTATT
TCCTTCCTCTGCCTCCCATTTCACCCCCATGTCTCCTTTCCTGCTACTTT
CTACTCCCTCCTTTTTTTTTATCTCTTTTTTTTTGTCCTCTCTCGTCATT
ATTTTATCTCTTATACTCAATCTTTTCCCTTCCCTTTACCTATTCTTACC
TTCCTCCCTCCCTTCTCCCCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_k21.g1 MSMg01no091_k21.g1 CHROMAT_FILE:
MSMg01no091_k21.g1 PHD_FILE: MSMg01no091_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:16 2005
         (238 letters)



>mm_chr6_7913482_7914116
          Length = 635

 Score =  414 bits (214), Expect = e-120
 Identities = 231/238 (97%), Gaps = 4/238 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaactgccgacatgactgctccattattagggaacattttaattgtgcataagagagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaaactgccgacatgactgctccattattagggaacattttaattgtgcataagagagag 475

                                                                       
Query: 61  aac-atcaagaggcatctggaacgctctagagtagagatgctaaagtagactgaacatgg 119
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aacaaacaagaggcatctggaacgctctagagtagagatgctaaagtagactgaacatgg 415

                                                                       
Query: 120 ccaggtctagggaagtgtgagagtggtagagaatagagacaaccagagacagcatagtca 179
           |||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||
Sbjct: 414 ccaggtctagggaagtgtgagagtgggagagaatagagacaa---gagacagcatagtca 358

                                                                     
Query: 180 gacaagctggagacaatgagaacaagagagactaggtgttgggatggtaaaatattga 237
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gacaagctggagacaacgagaacaagagagactaggtgttgggatggtaaaatattga 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 635
Length adjustment: 9
Effective length of query: 229
Effective length of database: 626
Effective search space:   143354
Effective search space used:   143354
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)