BAC Information

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BAC

Clone NameMSMg01-092J11
Chromosome6 (Build37)
Map Location 14,720,687 - 14,720,886
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797, Ppp1r3a
Downstream geneFoxp2, LOC100040568, Mdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092J11.T7 (MSMg01no092_j11.b1)MSMg01-092J11.TJ (MSMg01no092_j11.g1)
ACCAG310243AG310244
length740718
length of high quality
(start - end)
232 (129 - 360)201 (174 - 374)
definitionCHROMAT_FILE: MSMg01no092_j11.b1 PHD_FILE: MSMg01no092_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:30 2005CHROMAT_FILE: MSMg01no092_j11.g1 PHD_FILE: MSMg01no092_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCTGAATCACAATGCTATTGCTAAATCATGCTTGGTGTTCAC
CTAGCGAATTGGACTACCATTGCTCCTTCATATTTTGTGTTTTGCTATTG
TAGTGGGCTGCTCACAGCATGGACTGGAATCTCCACAAAGAACTATTTCT
TTCTTTTTTTTTTCCTTTTTTCCTTTTTCTTTTTTTTTAATTTTAGATAT
TTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCTCCTTTG
AAAATCCCCTACCCCCATCCTCCTGCTCCCCAATCCACCAACTCCTATTC
CTGGTACTGGGTTTTATAGCCTCCCCACGCACCAAGGGTCTCTCCTCCCA
TTGATGATTGACTAGCCCCCCCTCTGCTATATAAACATATATATATATAC
ATATATATATATATATATATATATAGTCCCAAGTTCCATCACGCATTCTT
CTTGATTGGCGTTATACTTCCCAACAGCTCTTTACTTATTGGCAACCTCA
TACCTTATGCCCCTTCTTATGCAGCTTAAAATTCCTTTCTACATCCAATG
TTAAATTAATCATTGTCCCCTCCCATAGGAAAACTTTCTTCCTCCTGTCC
CAAGGCACGACCGTGTACCTCCCTCCCCCCGACTCTTAGCCCTGCACTCT
TTACCAACCCTCTCTCGCACCCACCCTATATTCCGCACCG
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACTCTACAGAGCAGTA
ATGATAAAAAACTGTATGCCATTGATACAGAAGCAGGCAGAAAAATCAAA
GGAATATAATTGAAGACCCAGAAATGAACCCACACACCTGTGGTCACTTC
ATCTTTGACAAAAGAGTGAAAACCATCCAGTTAAAAACAAAGAGCATTTT
CAACAAAATTTCAAAAATTTCAAAATGCCAGCACTCAGAACTGAATCTTA
GTAGCAATTTTTTGATGATAGGATAATTCTAAAATTTAAATGGAATTGTA
AAGTTCCAAACATAAATTGAAGGTTATGCTTGAGACATTCTTGACAATAT
ATGAAGATATCAAAATCCCAAATATTTGGAATTTTATACTCAAGAAAAAC
ATTGAAAAACGATGTACCATTATTGAATGGGTCCCATTAGCACATATATT
TGAATGCTTAGTCTTCAGGACATGAAACTCCTTGAAAGGATTAATAAGGT
GAGGCCTTGCTGGATGAAGTGTGTCATTTTGCCGGGGTTTTGAAGTTTCT
TATTTTAAATCACTAGACGCTTTCTTATTTACCATTCCAAAAAATATCCC
CTTTCCCTATTTCCGGTCCCAAAGTCCCCTTAACTTCCCCTCTGCCCTGG
TTCCCAAACCACCCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_j11.g1 MSMg01no092_j11.g1 CHROMAT_FILE:
MSMg01no092_j11.g1 PHD_FILE: MSMg01no092_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:30 2005
         (201 letters)



>mm_chr6_14720404_14721004
          Length = 601

 Score =  364 bits (188), Expect = e-105
 Identities = 197/200 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaacccacacacctgtggtcacttcatctttgacaaaagagtgaaaaccatccagtta 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgaacccacacacctgtagtcacttcatctttgacaaaagagtgaaaaccatccagtta 424

                                                                       
Query: 61  aaaacaaagagcattttcaacaaaatttcaaaaatttcaaaatgccagcactcagaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaacaaagagcattttcaacaaaatttcaaaaatttcaaaatgccagcactcagaactg 364

                                                                       
Query: 121 aatcttagtagcaattttttgatgataggataattctaaaatttaaatggaattgtaaag 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aatcttagtagtaattttttgatgataggataattctaaaatttaaatggaattgtaaag 304

                               
Query: 181 ttccaaacataaattgaagg 200
           ||||||| ||||||||||||
Sbjct: 303 ttccaaagataaattgaagg 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)