BAC Information

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BAC

Clone NameMSMg01-094N01
Chromosome6 (Build37)
Map Location 7,913,708 - 7,914,066
singlet/doubletsinglet
Overlap genenone
Upstream geneAcn9, EG667500, Tac1, LOC667511, Asns, EG667529, C1galt1
Downstream geneLOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094N01.T7 (MSMg01no094_n01.b1)MSMg01-094N01.TJ (MSMg01no094_n01.g1)
ACCAG311882AG311883
length751700
length of high quality
(start - end)
311 (114 - 424)374 (56 - 429)
definitionCHROMAT_FILE: MSMg01no094_n01.b1 PHD_FILE: MSMg01no094_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:37 2005CHROMAT_FILE: MSMg01no094_n01.g1 PHD_FILE: MSMg01no094_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNN
NNNNTTCCCTTCNCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCTTTGTTCCGTTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGCCTTCTTTATATA
TGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCC
CAATCTGTTGGTGGTCTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCA
GAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAG
AGCAAGCCATTGCTGTTCTGTTCAGGAATCTTTCCCCTGTACCCATATCT
TCAAGGCTTTTCCCCACTTTCTCCTCTATTATTTTCACTGCCTCTGGTTT
TATGTGAAGTTCCTTGATCCACTTACATTTGACCTTACTACAATGAGATA
AGTATGGATCGATTCGCATTCTTCTTACTGATAACAACCAGTTGTGCCAG
CACCCAATTGATGAAAATGCTGTCTCTCTTTCCCTGGATGGCTTTAGCTC
CCTTGTCGAAGTATTTTTCGCCCCTACGTGCGCGGGTTCATTTCTGGCTC
TCCAATTCTATTCTCTTGGCTCCACTTGCACGGCCTTTCTACCAGCACCA
CGCATTTCCTTATCCCCCTTGCCCTGTTATTCGTCTTCTACGTCCCCCCT
G
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCCTATGGTTTATGAAGGAGAAGAAGAATGTTGCATTCGAGGCA
CTGCCGGAAGGAAACTGCCGACATGACTGCTCCATTATTAGGGAACATTT
TAATTGTGCATAAGAGAGAGAACATCAAGAGGCATCTGGAACGCTCTAGA
GTAGAGATGCTAAAGTAGACTGATCATGGCCAGGTCTAGGGAAGTGTGAG
AGTGGGAGAGAATAGAGACAACAAGAGACAGCATAGTCAGACAAGCTGGA
GACAATGAGAACAAGAGAGACTAGGTGTTGGGATGGTAAAATATTGAGTT
ATAAGGAGGGTGAGTATCTGTGGGACAAGAAGAGTCCAGAGACTGATGCG
CATGTGTATGTGTGTGTGTGTGTGTGGCAGGGGGATGTTCCCTTTTTCCC
CTCTCCCTTCCCCCCCCCTCCCCCCCCATTTTATCCTTTTCTTTTTATCT
TCCTCCTTACTCCTTTATTACCTAACATTTACCTACCTATATTCACTTTT
CCCTCTTTTTGTATCTTTTTATCTTTTCCATACCCTCCCCTCCTTCACCC
TTTTCTCCCAACCTCCTATCCTCCCCCCTTATTTCTCTCACCTCTTTCCC
CTCCTTATTTTTTTTTCGCCCTTTTCCCTCTCCTTTTTACTTTTCTCCCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_n01.g1 MSMg01no094_n01.g1 CHROMAT_FILE:
MSMg01no094_n01.g1 PHD_FILE: MSMg01no094_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:37 2005
         (374 letters)



>mm_chr6_7913522_7914293
          Length = 772

 Score =  638 bits (330), Expect = 0.0
 Identities = 353/362 (97%), Gaps = 4/362 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   tatggtttatgaaggagaagaagaatgttgcattcgaggcactgccggaaggaaactgcc 64
           ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 545 tatggtttatgaaggagaagaagaacgttgcattcgagggactgccggaaggaaactgcc 486

                                                                       
Query: 65  gacatgactgctccattattagggaacattttaattgtgcataagagagagaac-atcaa 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 485 gacatgactgctccattattagggaacattttaattgtgcataagagagagaacaaacaa 426

                                                                       
Query: 124 gaggcatctggaacgctctagagtagagatgctaaagtagactgatcatggccaggtcta 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 425 gaggcatctggaacgctctagagtagagatgctaaagtagactgaacatggccaggtcta 366

                                                                       
Query: 184 gggaagtgtgagagtgggagagaatagagacaacaagagacagcatagtcagacaagctg 243
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 365 gggaagtgtgagagtgggagagaatagag---acaagagacagcatagtcagacaagctg 309

                                                                       
Query: 244 gagacaatgagaacaagagagactaggtgttgggatggtaaaatattgagttataaggag 303
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gagacaacgagaacaagagagactaggtgttgggatggtaaaatattgagttataaggag 249

                                                                       
Query: 304 ggtgagtatctgtgggacaagaagagtccagagactgatgcgcatgtgtatgtgtgtgtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggtgagtatctgtgggacaagaagagtccagagactgatgcgcatgtgtatgtgtgtgtg 189

             
Query: 364 tg 365
           ||
Sbjct: 188 tg 187


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 772
Length adjustment: 9
Effective length of query: 365
Effective length of database: 763
Effective search space:   278495
Effective search space used:   278495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)