BAC Information

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BAC

Clone NameMSMg01-094O07
Chromosome6 (Build37)
Map Location 14,191,823 - 14,192,300
singlet/doubletsinglet
Overlap genenone
Upstream geneGm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
Downstream geneLOC100040513, LOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094O07.T7 (MSMg01no094_o07.b1)MSMg01-094O07.TJ (MSMg01no094_o07.g1)
ACCAG311939AG311940
length680709
length of high quality
(start - end)
249 (5 - 253)636 (74 - 709)
definitionCHROMAT_FILE: MSMg01no094_o07.b1 PHD_FILE: MSMg01no094_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:43 2005CHROMAT_FILE: MSMg01no094_o07.g1 PHD_FILE: MSMg01no094_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGATCCGCGGAATTCTTTGTTTACCTCTGGACCCCATTTTTAAATAGGG
TTATTTGTTTCTCTGGAGTGTAATGTTTTGACCTCTTTGTATATATTGTA
TATTTGCCCTCTATCAGATTTAGGATCCATAAGAAGTCCTTGGACCTATG
AATGTTCTATGGCCCAATATAAGGGAATGCCAGGGCCAGCAAACTGGAGT
GGGTTGCTTGGTGAGCACGGAGGAGGGGAAAGGGATAGGGGTCTTTTGGA
GGCGAACCCAGCAAAGGGTATACCATCCTGAACTGTTCATCACCATCTTC
CCTATTAACAAGTGATTATTATTTTTTTTTCCCCCCCCCCTCCCATCTTC
GATTGAAACAACCCCATCTATTACTACGTATCTTTCTTAAATATAATTTC
CCCTGCTGTCACGTAACTCCTCAACTTCCTCCCTACCAATTTCCCATCCT
CATCCAACTCCCTCATTTTGTTCTTGACCTCTACCCTGCAATTGTTTCAC
CCACATCTTTTTCCACTATCCCCTCCCCCTCCACTTTCCTTTTCTTTCTT
CATTTATTCTCTCTTCCTTTATCTTCCCTCTTTTCTGTCCTTCCCTTACT
CATCTTCACTCTTCCTCTCGCCTTAACCTGTCCCTTTTCATCTCGCTCTG
TTCCCTTCTTTCGTCCCTAGACCCCACTCT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTTCATTCTTAAACATGATGATGGA
GATAGAAGCTACTTATAAATCTATTTTTGCAGTGATTTTAATCACAAATA
GTTGAGGAAAGTTACAGATGCTCCTCATGTGCTACATGATTTCCTGCGTG
GCCTTCCTGGAACATTTCTTTGTTCAAATTGATGGAGCTCCATTGGCCAT
TAAACTCACTTGGAATCCAACATTCCCCCTGTTGGGTAGGCATTCTGTAG
ATGAAAAATATGGAATTAAATGGTCCCATGATTAATAGGACCACACTTTG
CAAATTGCTCTGTGATCTCCCTCATCCCTCCCTTTCTTCCCCCAGCCCCT
AGCAGCTACTACTTTTTTTACCCATACAACTCTTTTTACTTTTTTCAAGA
ACATCATCTGGTTCAAACTAGATGTAGCCTTTTAATTTGGCTTCTATTAC
TAAATAATCCCCATTTAAGCTTTCTCTCTGGTGAGGCATCATTAGAAAAT
AGCACAGTCACAAATAAGGGTAAACTCCAATAATACAACTTATCTTTAAA
AATGTCTCCATTTTTATTGGTGTGAGAACATTTCTTTTACTCTTGCATAC
TCATTGTATCTATATATACATTTATATATATTGATATATTTATACATATT
TATATAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_o07.g1 MSMg01no094_o07.g1 CHROMAT_FILE:
MSMg01no094_o07.g1 PHD_FILE: MSMg01no094_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:43 2005
         (636 letters)



>mm_chr6_14191823_14192858
          Length = 1036

 Score =  893 bits (462), Expect = 0.0
 Identities = 474/478 (99%), Gaps = 1/478 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttcattcttaaacatgatgatggagatagaagctacttataaatctatttttgcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agtttcattcttaaacatgatgatggagatagaagctacttataaatctatttttgcagt 419

                                                                       
Query: 61  gattttaatcacaaatagttgaggaaagttacagatgctcctcatgtgctacatgatttc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 418 gattttaatcacaaatagttgaggaaagttacagatgctcctcatgtgctacatgacttc 359

                                                                       
Query: 121 ctgcgtggccttcctggaacatttctttgttcaaattgatggagctccattggccattaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 358 ctgcgtggccttcctggaacatttctttgttcaaattgatggagcttcattggccattaa 299

                                                                       
Query: 181 actcacttggaatccaacattccccctgttgggtaggcattctgtagatgaaaaatatgg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 actcactcggaatccaacattccccctgttgggtaggcattctgtagatgaaaaatatgg 239

                                                                       
Query: 241 aattaaatggtcccatgattaataggaccacactttgcaaattgctctgtgatctccctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aattaaatggtcccatgattaataggaccacactttgcaaattgctctgtgatctccctc 179

                                                                       
Query: 301 atccctccctttcttcccccagcccctagcagctactac-tttttttacccatacaactc 359
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 178 atccctccctttcttcccccagcccctagcagctactacttttttttacccatacaactc 119

                                                                       
Query: 360 tttttacttttttcaagaacatcatctggttcaaactagatgtagccttttaatttggct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tttttacttttttcaagaacatcatctggttcaaactagatgtagccttttaatttggct 59

                                                                     
Query: 420 tctattactaaataatccccatttaagctttctctctggtgaggcatcattagaaaat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  tctattactaaataatccccatttaagctttctctctggtgaggcatcattagaaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)