BAC Information

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BAC

Clone NameMSMg01-095E14
Chromosome6 (Build37)
Map Location 48,582,211 - 48,582,796
singlet/doubletsinglet
Overlap geneAI854703
Upstream geneRn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775
Downstream geneGimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095E14.T7 (MSMg01no095_e14.b1)MSMg01-095E14.TJ (MSMg01no095_e14.g1)
ACCAG312236AG312237
length690710
length of high quality
(start - end)
590 (43 - 632)283 (74 - 356)
definitionCHROMAT_FILE: MSMg01no095_e14.b1 PHD_FILE: MSMg01no095_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:15 2005CHROMAT_FILE: MSMg01no095_e14.g1 PHD_FILE: MSMg01no095_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGAGGCTGACCCCCTTTTAGTCCATCCAATCCCTTTCTCTTCAATCTG
ACAGCACCCCAAATTTCTGGAGACAGGCTTCCCTCCCCAGACACTGCCCA
AGACTGACTCCTGGGCTTGGTTCCTTTTCCCTGTTTTGTGTCGGACAGGA
TGTAGGGTTTTACAGTGGAGCCCTCTGCTTGCCTTTGGCTCTAACTTCCC
TGTGGAGTCTCAAGGGAAGGTTGGCCTGCTGAAGGGATGGTAAATAATTT
TCTCTGTGTCTGTTCCTCGGGAAAGGAATCGTACTTCCACTAGCCATATG
CAAACAATTGGACCTCCTAGCTGGGCAGGCTTGCAGCTCCAGGCAGGTAT
CACCTGGGAAGGTGGGGGTTGCAGGGCACCAGAACCCTGCACATGGTGGG
TCTAAGCAGTGGGAGAAGCCAATGGAGGAGTTGCATGCGTCCCCTAAGTA
AGCAGGGGTACAACTTGGAGGTGAGGGTCTTGGGCCACTGCTGGTCAAGG
ACTCATATCCTCACATATTAGCCCGTCAGTCGAGAGCCCACAACTGTCTC
CCTCCCTTCCTAGAATGAGCCACTCATTAGGAAAGGNGGAGGGGCTTTCT
TTTCTATCAGGACTTGGTAGAAACCTCTGGATTCCTGACT
CGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTCAGGGT
GTAATAGTGGGGTGATGGGCAAGCAACGAATCAGGAGCTGTCACGCCATA
TCAGGTGCTGAAATGTCACGCTGCGGGTTATAAAAGCAGCGCCATTTTCC
CGGTTCAGGATCTTCCTGAGAAGCAAGCAATAAAGCTCTTGCCGCGGAAG
ATTCTGGTTTGTTGTGTCTTTCTTGCCGGTCGAGTGGGACGCAATGGGGG
GGGGGTCTTTTTAATGAAATAATCATTTTAAATGATTTTTTACAATGTAT
GCAACTGATATTTTTATCACCCCCCCCGCCCAATTAAGTTCCAGGTCCTT
CTAACTCTGAATGAGCGCCAAAGAAAAAATTCCACTGTGCTGGGGAGGAG
TGTGTATGCGCAATTATGTGTGTGTATATGCACATGAGTGTGCACTTGCC
TGTGAATATGTGCGCATCAGTTTTCACGATATTACCCAAAGCGTTTAGAT
CGCGTATATACTGGCGAACTAGTTTGATTACGCTTTTTTTGTCGTTAGAA
TCCCCCAAAATCCTTATTTTATGCTCTAGCACTCTGTTTTAGCAATTACA
CTTAGTTACAGTTGATTCTCTAACTTATTCATTTTTTACTTAATTTCCTT
GCGTGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_e14.b1 MSMg01no095_e14.b1 CHROMAT_FILE:
MSMg01no095_e14.b1 PHD_FILE: MSMg01no095_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:15 2005
         (590 letters)



>mm_chr6_48582007_48582996
          Length = 990

 Score = 1071 bits (554), Expect = 0.0
 Identities = 578/586 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaggctgacccccttttagtccatccaatccctttctcttcaatctgacagca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaggctgagccccttttagtccatccaatccctttctcttcaatctgacagca 264

                                                                       
Query: 65  ccccaaatttctggagacaggcttccctccccagacactgcccaagactgactcctgggc 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccccaaatttctggagccaggcttccctccccagacactgcccaagactgactcctgggc 324

                                                                       
Query: 125 ttggttccttttccctgttttgtgtcggacaggatgtagggttttacagtggagccctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggttccttttccctgttttgtgtcggacaggatgtagggttttacagtggagccctct 384

                                                                       
Query: 185 gcttgcctttggctctaacttccctgtggagtctcaagggaaggttggcctgctgaaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttgcctttggctctaacttccctgtggagtctcaagggaaggttggcctgctgaaggg 444

                                                                       
Query: 245 atggtaaataattttctctgtgtctgttcctcgggaaaggaatcgtacttccactagcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atggtaaataattttctctgtgtctgttcctcgggaaaggaatcgtacttccactagcca 504

                                                                       
Query: 305 tatgcaaacaattggacctcctagctgggcaggcttgcagctccaggcaggtatcacctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgcaaacaattggacctcctagctgggcaggcttgcagctccaggcaggtatcacctg 564

                                                                       
Query: 365 ggaaggtgggggttgcagggcaccagaaccctgcacatggtgggtctaagcagtgggaga 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 ggaaggtgggggttgcagggcaccagaaccctgcacatggtgggtctaagcagtgggaaa 624

                                                                       
Query: 425 agccaatggaggagttgcatgcgtcccctaagtaagcaggggtacaacttggaggtgagg 484
           ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct: 625 agccagtggaggagttgcatgtgtctcctaagtaagcaggggtacaacttggagatgagg 684

                                                                       
Query: 485 gtcttgggccactgctggtcaaggactcatatcctcacatattagcccgtcagtcgagag 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 685 gtcttgggccactgctggtcaaggactcatatccttacatattagcccgtcagtcgagag 744

                                                         
Query: 545 cccacaactgtctccctcccttcctagaatgagccactcattagga 590
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccacaactgtctccctcccttcctagaatgagccactcattagga 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)