BAC Information

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BAC

Clone NameMSMg01-095E19
Chromosome6 (Build37)
Map Location 30,348,967 - 30,349,411
singlet/doubletsinglet
Overlap genenone
Upstream gene4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1
Downstream gene2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095E19.T7 (MSMg01no095_e19.b1)MSMg01-095E19.TJ (MSMg01no095_e19.g1)
ACCAG312246AG312247
length791787
length of high quality
(start - end)
451 (138 - 588)203 (134 - 336)
definitionCHROMAT_FILE: MSMg01no095_e19.b1 PHD_FILE: MSMg01no095_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:16 2005CHROMAT_FILE: MSMg01no095_e19.g1 PHD_FILE: MSMg01no095_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCCCCCCCCCCCTCXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGT
ATAAACAACGAATGGTAGGATACCACCATTTTGCCACCCCTAATGAATTA
AGAGAACTTCCCGTTGAATGTCTGCAATCACTAGCATCACATGACAGTAT
AACATGATCATGTTGAAGGCTTAAGGACACTGGGGGCAGGGGGAGCAATG
AGGGCCAATAAAATGGCTCATTGGGTAAAGGCAGAAAGTATGTAGGAGCT
GAAAGACGGGAGGCAGTGCTACGAGACTCAACTCATTGCAGTTCACATAA
ATATCAGCTATAGTTGCCTGCACAAGACCAGGCTGATCAACATTCCAGCA
CAGGTCTGTGTCGTGTGAGGCTCTGCTTCCAGCTGAGGAACTCTGGACAA
CTGATGGCTCCTGGATGAGGGTCATTTTCTTCAAGGGTGTGGCTACTGAT
AGTTGCTCATGCTCCAGTGTATAAATCCACACCCCATCCACACGTGCAGG
GAACACCAACTGGACTCAGTGCTTATTTTGGTCTAAAGTTAGGAGCTATG
TTTCACCAGTTGACACGGCTTAATCTAAAAGACCCAAGTTTGCTCCCAGC
ACCCACACCAAACAGTTTTACAACCCCCCTGAAGTTCAACTCTTTACACT
CTTTATACCCATAACTTCCTTATTCTTACCAATGATTTAAC
NTTTTTTTAAANNANNNNNNTTTTTATTCTTNTTCCCCTCCTTCTTCNTC
CCCCNATTACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCCTCCATATTCCAC
ATAAGGATGCACATGCACATGTGTGGACATGTGGTCCCACTGTTCTGTAA
GTGTGAAGCTGGTAAGGAGAATATGAAGCATATGGAAAGGGTGGGGGCGG
TGTCGTGGGAGGCTGAGGACCTGAGTTCAAGGGAAGTCTGCGCTACACCA
TGAGTTTTCAGAGTCAGTGCACAATTACATAACTAAACAACACCAGGAAA
GGACAAAAGAGTTACAAGTGGGGGTATATATAGTCCAGTGAAAGAACCTG
TGTTCAGTTTCCAGTATTTTTTCTCACCCCCCCCCCCCCCAAAAAAAAAA
AAAAGATGGCTTCATAAGATTGCGCCCCAACATATCATAACAATTAAAAG
GTCCGCGATAGTTAATTCTTATATCAAATTTTTATACTATTTTAGTCTCC
TTTCCCATAAAGGACCCTTTGTACCTTTTTCCCACTCCCTATCTTCCCCC
ACCTTCTTTCTATTTTTTTCCCCCAACCCCTCGCCTCCCCCCTATTAATT
ACCTTTCCTGCGACCATTTTTATCAGACTTTATTATTTCCCTCTTCACCG
CTGCGCCATACGCAATATATATACTTTTTTTATTTTTCTTACCCCTCTCA
ACCTCCTCCCTTAGCCCCCTCTGCTCATTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_e19.b1 MSMg01no095_e19.b1 CHROMAT_FILE:
MSMg01no095_e19.b1 PHD_FILE: MSMg01no095_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:16 2005
         (451 letters)



>mm_chr6_30348899_30349749
          Length = 851

 Score =  830 bits (429), Expect = 0.0
 Identities = 441/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtataaacaacgaatggtaggataccaccattttgccacccctaatgaattaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattctgtataaacaaggaatggtaggataccaccattttgccacccctaatgaattaa 454

                                                                       
Query: 65  gagaacttcccgttgaatgtctgcaatcactagcatcacatgacagtataacatgatcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gagaacttcccgttgaatgtctgcaatcactagcatcacatgacagtataacatgatcat 394

                                                                       
Query: 125 gttgaaggcttaaggacactgggggcagggggagcaatgagggccaataaaatggctcat 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gttgaaggcttaagggcactgggggcagggggagcaatgagggccaataaaatggctcat 334

                                                                       
Query: 185 tgggtaaaggcagaaagtatgtaggagctgaaagacgggaggcagtgctacgagactcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgggtaaaggcagaaagtatgtaggagctgaaagacgggaggcagtgctacgagactcaa 274

                                                                       
Query: 245 ctcattgcagttcacataaatatcagctatagttgcctgcacaagaccaggctgatcaac 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctcactgcagttcacataaatatcagctatagttgcctgcacaagaccaggctgatcaac 214

                                                                       
Query: 305 attccagcacaggtctgtgtcgtgtgaggctctgcttccagctgaggaactctggacaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 attccagcacaggtctgtgtcgtgtgaggctctgcttccagctgaggaactctggacaac 154

                                                                       
Query: 365 tgatggctcctggatgagggtcattttcttcaagggtgtggctactgatagttgctcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tgatggctcctggatgagggtcattttcttcaagggtgtggctactgatagttgctcatg 94

                                    
Query: 425 ctccagtgtataaatccacacccca 449
           |||||| ||||||||||||||||||
Sbjct: 93  ctccagagtataaatccacacccca 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)