BAC Information

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BAC

Clone NameMSMg01-095K20
Chromosome6 (Build37)
Map Location 7,520,158 - 7,520,685
singlet/doubletsinglet
Overlap genenone
Upstream geneShfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500, Tac1
Downstream geneLOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095K20.T7 (MSMg01no095_k20.b1)MSMg01-095K20.TJ (MSMg01no095_k20.g1)
ACCAG312534AG312535
length6821,095
length of high quality
(start - end)		643 (40 - 682)---
definitionCHROMAT_FILE: MSMg01no095_k20.b1 PHD_FILE: MSMg01no095_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:46 2005CHROMAT_FILE: MSMg01no095_k20.g1 PHD_FILE: MSMg01no095_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CTTTTTGTTCTATATTTTATCAGTTTGGGGCTGTGAATGACTCTGATAGT
TTTTCAGGGTAAGACTGTACTTGTGTATTATAATAGGTAATTAAGTGGCA
GGCAAGGCTGAGTGGCTACTCAGTGATTCAGAATTCCTGCAGGAGATCAT
GGCTCAGTCTACACAGTCTGTACAAATAAGGAGCTTTGTGCTGAACACTG
CTTCACTTCTGGGAGTCTGGGATTTTAGTACATGACCTGGAGAGTGAGCG
TGGGGAAAACCCCAGTAAAAGCCTGGGTCATTGCATCTTCATTAGGCCTC
CCTGGTCAGAAATACAGAACTAATATTGCTACATTTATAATGTTCCGTGT
ATGTGGCTGCATGTGTCTCATAAAGGATGCATTGTAAACCAGCCTGTCAT
CACTGTCTTTCGTAAGTCTAATAAAACTTATACATGTGGATGGGTTTTAC
TTTTTTTTTCAGTTTGCAACATCTTTATTCATTCTTGCATTCTGTGGCTT
TGCCTTTAACATTTCCTCTATCTACTTTGTCATACACACATACACACACG
GCATGCGTGTTTGTTCAGTTTGTTTGTTTGCTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATATA

TTTTTTTTTTTTTNNNNTNNTNNNNTTTTCTTTTCTTTTNTTTTCANNAN
NNNNNNNNNAAACATAAACATNNTTAAAACTTAAAANNCTTAAAAAAANN
NNTTCCTAAAGAAAANNNTTTCGAAGTTTTAAACAAGAAGAGTTCTCAGA
AGAANNNNNNNNCTTTTCTCCAAAAAAAAAAGGAAAAAGAAGAGAGNNNN
NNNNNNNNNNNNNNNNNNNNNANNNTTNNTTTTTTTTTTCCTCTCCAAAA
AAAAAAAAAAATAGNNNNNNNNNNNNNNGNNNNNNNANNNNNNNNAGGGA
GGGAGGAGAGGGGGGAAGGGAAANGAAAAAATATTTTTTTTTTTTTTCCC
CCCCCCCCACAAAAAAAAAAAAAAAAAAAAGAGGGTTTNCTTTCTTTTTA
ATTTTTCTTAAAATAAATATAAATAATAAAAATAATAATAAAATAACATC
ATAATAATACTTATACAAATATTTACATAATAAACACCAAACATAATATA
TAAAAAAAATAGAAATTTTATTTACAAAAAAAAGAAAGAAGAAAATAAAA
CATAAATAAAAAAGAAAAATATTTTTTTTTTTTTCCTCCCCCCCCCCCAC
CCCCCAGAAGAAGGGAAAAATAATATATATATTTCTTCCTCTTTCCTCCT
CCTTTCCTCCAAAAAAAAAAAAAAAAAAAAAAAAACTTCGGGTGGGGGGG
TGGGGGGGTGGTCATCTCATTATACACATCATAAAATACTATATATTATC
AAAAAAATTATTAACACTAGTTTATTTCCATATTTTTATATAACACTATA
TTAACAAACCCAAAAAAAATATTATTATAACACCATACTTATTATACAAA
TCATAAATCAACCCCCTCACAAACCCCCCCTTCTCTCACCCTCTACATAT
AAAAATATTCTCTTCTCCCTCTTATAACCCAATTATAAACAATATCCCCT
AAAATATTTAATCCCCCCATTTATCACTCCTTCACTAAAAATATAAAATA
TACATTATACTTACTTCATAATATTTTCTCAACATTCATNCTATCTCAAA
TATCTATAATATATATCCCAATAATATCTAATAATAATATCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_k20.b1 MSMg01no095_k20.b1 CHROMAT_FILE:
MSMg01no095_k20.b1 PHD_FILE: MSMg01no095_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:46 2005
         (643 letters)



>mm_chr6_7519641_7520685
          Length = 1045

 Score =  971 bits (502), Expect = 0.0
 Identities = 521/528 (98%), Gaps = 2/528 (0%)
 Strand = Plus / Minus

                                                                        
Query: 35   tttggggctgtgaatgactctgatagtttttcagggtaagactgtacttgtgtattataa 94
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tttggggctgtgaatgactctgatagtttttcagggtaagactgtacttgtgtattataa 986

                                                                        
Query: 95   taggtaattaagtggcaggcaaggctgagtggctactcagtgattcagaattcctgcagg 154
            |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 985  taggtaattaagtggcagacaaggctgagtggctactcagtgatccagaattcctgcagg 926

                                                                        
Query: 155  agatcatggctcagtctacacagtctgtacaaataaggagctttgtgctgaacactgctt 214
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 925  agatcatggctcagtctacacagtctgtacaaataaggagctttatgctgaacactgctt 866

                                                                        
Query: 215  cacttctgggagtctgggattttagtacatgacctggagagtgagcgtggggaaaacccc 274
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 865  cacttctgggagtctgggattttagtacatgacctggagagtgagcgtagggaaaacccc 806

                                                                        
Query: 275  agtaaaagcctgggtcattgcatcttcattaggcctccctggtcagaaatacagaactaa 334
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 805  agtaaaagcctgggtcattgcatcttcattaggcctccctgggcagaaatacagaactaa 746

                                                                        
Query: 335  tattgctacatttataatgttccgtgtatgtggctgcatgtgtctcataaaggatgcatt 394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745  tattgctacatttataatgttccgtgtatgtggctgcatgtgtctcataaaggatgcatt 686

                                                                        
Query: 395  gtaaaccagcctgtcatcactgtctttcgtaagtctaataaaacttatacatgtggatgg 454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  gtaaaccagcctgtcatcactgtctttcgtaagtctaataaaacttatacatgtggatgg 626

                                                                        
Query: 455  gttttac--tttttttttcagtttgcaacatctttattcattcttgcattctgtggcttt 512
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625  gttttactttttttttttcagtttgcaacatctttattcattcttgcattctgtggcttt 566

                                                            
Query: 513  gcctttaacatttcctctatctactttgtcatacacacatacacacac 560
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565  gcctttaacatttcctctatctactttgtcatacacacatacacacac 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1045
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1035
Effective search space:   655155
Effective search space used:   655155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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