Query= MSMg01no096_e20.b1 MSMg01no096_e20.b1 CHROMAT_FILE:
MSMg01no096_e20.b1 PHD_FILE: MSMg01no096_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:36 2005
(412 letters)
>mm_chr6_4920312_4921124
Length = 813
Score = 768 bits (397), Expect = 0.0
Identities = 409/415 (98%), Gaps = 5/415 (1%)
Strand = Plus / Minus
Query: 1 attctcgttattt---ttttataaaatatcttaaccaatctttctaattgtattagttcc 57
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attctcgtta--taaattttataaaatatcttaaccaatctttctaattgtattagttcc 556
Query: 58 acagggttcatatgtcatttttttacattcactttaatcaaaactgaaggccaatactaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acagggttcatatgtcatttttttacattcactttaatcaaaactgaaggccaatactaa 496
Query: 118 taaagtcaacgaaagcaaatggatcatatattgctttttctatataatatctaatgatta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 taaagtcaacgaaagcaaatggatcatatattgctttttctatataatatctaatgatta 436
Query: 178 gtacagaaattaacaaaatgaatgctgaccttgaagtcctaactctatttaactgaataa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtacagaaattaacaaaatgaatgctgaccttgaagtcctaactctatttaactgaataa 376
Query: 238 tctgaaaagagacaattagcctatctctatcacaagccttctctactaactgcctgctac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tctgaaaagagacaattagcctatctctatcacaagccttctctactaactgcctgctac 316
Query: 298 agaaagtaaggaagcaagcagtgcccatgaaagcctttcccacatcaccttaccttttgc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agaaagtaaggaagcaagcagtgcccatgaaagcctttcccacatcaccttaccttttgc 256
Query: 358 acatagccagaaagctatgtgctctgtttctaataggaaaggagggaggaaagtc 412
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acacagccagaaagctatgtgctctgtttctaataggaaaggagggaggaaagtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 813
Length adjustment: 9
Effective length of query: 403
Effective length of database: 804
Effective search space: 324012
Effective search space used: 324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_e20.g1 MSMg01no096_e20.g1 CHROMAT_FILE:
MSMg01no096_e20.g1 PHD_FILE: MSMg01no096_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:36 2005
(429 letters)
>mm_chr6_4754083_4754911
Length = 829
Score = 743 bits (384), Expect = 0.0
Identities = 418/430 (97%), Gaps = 3/430 (0%)
Strand = Plus / Plus
Query: 1 actgtccagttgcctaagggagtaaaagtccagatccaggagaaaccagcacctcccaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtccagttgcctaagggagtaaaagtccagatccaggagaaaccagcacctcccaca 260
Query: 61 tcccagaacatctacactagcatgttcacacatgtgtccacgcatgtgcacacgcgcaca 120
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct: 261 tcccagaacatctacactagcatgttcacacatgtgtccatgcatgtg--cacgcgcgca 318
Query: 121 cacacacacacaaacacacaccttaacagtggtagctaaattgatggaagcaaagaacag 180
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 319 cacacacatacaaacacacaccttagcagtggtagctaaattgatggaagcaaagaacag 378
Query: 181 attagtggttgccagtgtccggggggccatgaagagggaaatttgttgtttacaggtaga 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 attagtggttgccagtgtccggggggccatgaagaggggaatttgttgtttacaggtaga 438
Query: 241 gagttttggtttataacatt-aaaaaaaatctctggtaattgtatgaataaaaaagctga 299
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||
Sbjct: 439 gagttttggtttataacattaaaaaaaaatctctggtaattgtatggataaaaaagttga 498
Query: 300 atatcttaaaactaccaaactgtatttttagaaatcaatactgatgcacatgcatgcagc 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 499 atatcttaaaactaccaaactgtatttttagaaatcaatactgatgcagatgcatgcagc 558
Query: 360 ccatcatcggactgagcgtggggagcccaatggaggcgttagggtaaggattgaaggagc 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 559 ccatcatcggactgagcgtggggagcccaatggaggcgttagggcaaggattgaaggagc 618
Query: 420 tgaaggggct 429
||||||||||
Sbjct: 619 tgaaggggct 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
