BAC Information

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BAC

Clone NameMSMg01-097B24
Chromosome6 (Build37)
Map Location 59,092,414 - 59,092,660
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
Downstream geneTigd2, Gprin3, EG634166, EG627108, EG434019, LOC671300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097B24.T7 (MSMg01no097_b24.b1)MSMg01-097B24.TJ (MSMg01no097_b24.g1)
ACCAG313636AG313637
length752965
length of high quality
(start - end)
247 (135 - 381)---
definitionCHROMAT_FILE: MSMg01no097_b24.b1 PHD_FILE: MSMg01no097_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:45 2005CHROMAT_FILE: MSMg01no097_b24.g1 PHD_FILE: MSMg01no097_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACAAAAAAAAAAGACATAAAAATACACTCATGGGCGTCCCGCGCGGCCC
TTTCCTTGNTTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCA
GAGGATCCGCGGAATTCAACTTTTTCCACAGTCATCATTTATAACCCCAA
CAGTATGACCATGTGGGGCTGAGCCACAACCACCGATTTCCAATATAGCA
AGAATAGAAATGTTTGTTTGGCAGCAGGGTAAAACTGACTTTATTGAAAA
TAGCTTTTCAGATTTTCTCTTTGTTCTGACTAGGATGGAGAAACGATAAT
AATCACTTCCCCTGTCCCCTACACACAATAAAACATTTGGAAAACTTGGC
AGTTTTTCTCAACCCATTTCTTTTATGTCTGATTAAAATGTGTTGGTTCT
TTCTTAGTAGTAAAGGAATCTTTGTTGTAACCCCCCCCACCGTATTGTTT
TTGAAAGCTTCTATTCTGTTCACTGCTTTAGCTAAAAATATTCCTTTCTT
CCCTTGTATTCCTGAGTCTTTCTCTTAACCAAGGAAAATTTAGGCATTTC
TCACAAGGAGTAACCTTAAGGCATTGCTTTTTAGAATAGGAATGCATGAG
GATTACGTCCTATTGATGAATCTTCAGAGTATAATTTGGTGGACCACACG
ATAATTCCGATAAGTGAAGTGCGGTGCCTTGGCGAGCGCGTTTTAAGAAG
AGGCTCCGGCAAAGAGCCGGCCCCTTGTCTTTACCGGGAAGTGTTCCTTC
CC
CAAGCGAACAAAAACACCACACACATTAAAATTTGTTTCTTGGTATACTC
ATTCCGGTGGCAGGGTGGCAATTGACTGCTGAATAAGGATGCGCGCGCGT
TTTTCAACCAACACCTGCTGTTTTGCTTGATGGTGCTGGGTTCGTTCGTC
CAATATATTAAATATCATAATGGAAATGGTTGGGGTGTCGGGAAAAAATT
TAACATTAACTACATTGGGGCAACCTAATTATCCATTAATCCCGATACTC
TTGTTTTTAGTGAACTATTATATTCAATACAACCGGTAAAATACAAAAAT
ATTCAAATAAAATATCTATTTGTTAATAACAAAAATTTACGACCCAAATT
ACAATATAATCGAATGGGTCCAGCAGAGCAAATAAAAAACAAAAAAATAA
ATTATAAGACACAAAGGCCGATCGTAAAACAAATAAAAAAAATTAAAAAC
AAAAATAAATCGCACCGACAATATAAAAAAACATATAAGGAATAAAAATA
ATAGAAAATGCCACGAATAATGCAACACCAAAGAGACAATAAATTATAAA
AAATTAGGCGAAAAAAAAAAAAAATATATGACAAGAGAACGTAGGAAAAA
AGAAAGAAAAAAAAAAGAAATAACAAAATAAGCGGTGAAAAAAAAAACAA
AAAGAGAGAAAAAGAAATATAAACAAAATAACCGACAATAAACAAAAACT
AATAAAAAAAAAATGTAAATAACGCCAACCCATCAAAACAACAACAAAAT
TAAGTAAAAATAACGGTTAAAATCAAAACATACAAAAAATACTTAATAGC
ATAAAAAACATACGGAATTACATAAAATAAAAATTACAAAACAAAAAATA
AACAACAAACATAATAAAGGTTAGAAAATGAGAACCCTACAAAATAAAAT
AAATAAAAAATAAAAATTATATTATAAAATGAACCAAAAAATAACATAAA
AAAATCAAATGTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_b24.b1 MSMg01no097_b24.b1 CHROMAT_FILE:
MSMg01no097_b24.b1 PHD_FILE: MSMg01no097_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:45 2005
         (247 letters)



>mm_chr6_59092214_59092860
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttataaccccaacagtatgaccatgtggggctgagccacaaccaccgatttccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tcatttataaccccaacagtatgaccatgtggggctgagccacaaccactgatttccaat 260

                                                                       
Query: 61  atagcaagaatagaaatgtttgtttggcagcagggtaaaactgactttattgaaaatagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagcaagaatagaaatgtttgtttggcagcagggtaaaactgactttattgaaaatagc 320

                                                                       
Query: 121 ttttcagattttctctttgttctgactaggatggagaaacgataataatcacttcccctg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ttttcagattttctctttgttctgactaggatggagaaacgaaaataatcacttcccctg 380

                                                                       
Query: 181 tcccctacacacaataaaacatttggaaaacttggcagtttttctcaacccatttctttt 240
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ccccctacacacaataaaacatttggaaaacttggcagtttttctccacccatttctttt 440

                  
Query: 241 atgtctg 247
           |||||||
Sbjct: 441 atgtctg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)