BAC Information

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BAC

Clone NameMSMg01-097K24
Chromosome6 (Build37)
Map Location 104,811,686 - 104,811,869
singlet/doubletsinglet
Overlap geneCntn6
Upstream geneLOC100043345
Downstream geneLOC384470, LOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097K24.T7 (MSMg01no097_k24.b1)MSMg01-097K24.TJ (MSMg01no097_k24.g1)
ACCAG314056AG314057
length6691,136
length of high quality
(start - end)
184 (95 - 278)---
definitionCHROMAT_FILE: MSMg01no097_k24.b1 PHD_FILE: MSMg01no097_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:31 2005CHROMAT_FILE: MSMg01no097_k24.g1 PHD_FILE: MSMg01no097_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGCTCCGCGGAATTCTGATTTCTTCACTGATGCTTCCATCTCCCCATCA
CTGACTGTTCTGATTTCAATCAAATAGTCTTCTTCCAATGGAACCAGGAG
TTCAGCAGATGTATTATTTGTTTCCAAAATATGAGTTTTACTCTGTCGGT
TCTGCCGATAGAGGATCTGTGCGAAAGGCAGAGTCAAGTTCAGATGGGTT
TGGTGGGTACTGAGGGTTCAGATGCTGTTATGATGAGGGACAAGGAGCGA
CTTTAAATCAATGCTCTCCCTTATGTTAAAAGATTCTTTATCAACATTGC
ACTCCTTACATGCAAACATTCTTTTTTTTTTATCCTCCCCTCCACTATTG
GGAAATAATATTTCTTTGGGATCCCTGCCTCACGCAAGAAGAAAAACCCA
CCCCAGGGGGAGGGATTACTATGAAAACGCGCTTTCAGTTTGGATCCATT
ACCAATGCCCGACTTTGCCACCCTGCCCAAGCCAAGTTACATTACCACTG
ATGGGGATCACTTACCCCTGAGCGCTCGGAGATGATCGTTGGTACTTGGC
ACAACTCTCTGCCATATTTCTTTATGTGCCGCCAACAGCCGGTGTCTACC
GTGACCCAACATTTTTTATACTGCAATTAAACTTACGCCCCTAAATTCCA
CCCCGGGGTGTTTCTACCC
CCACCCAACACACACAACACCACACCACTTGGAACACATCAATAACGGNG
AGACACAACAAACACAACACCCCCGGGGGTGCAACAAAACGAGCGGGCAA
ACAGGTTAGGGTGGTGCGCCACTGTGTCAAACACAACACCGACTTCTTTT
TCCATCCATCCGCCCCGGTGGGTTGGTTGTCAACAAAATAAAATATAAAT
AAACAACAATAGCTACACGGGTGGGTGGGGTTGGGGGAAAAATATTGTAT
ACATCATAACAATATTTATTGTCAACAAAAACTAATCACTTACCAACCGC
CTAGCGGCGTTGTTTTGGATTGCCCTTGGTAAAAACATTTTTACCGGGGG
ATACCAAAAAAAACATTTTGACCTAACAATATGTGGGGTGGGTTACAAAT
TAAAAATTGTCTTACAACAATTTTTTAACATTTCGTGGTTCCTGTAACGT
GTGGTCAAACAAAAACACAAACAAAATTCTAACTTTTCCGGTGTGACTTG
GGGTGTTTCTATATACCACCTGTTTGCANNTTTACGCTTACACTTAAATG
GGGTGGCGCGGGTCAAATAACCACGACCTCATAGGTGATACACCCTACAG
GGTAGTGTTGTCCGTTTATATTGTCTCACCCANGGGGAAGAACAAAAATA
TATAACATGAATTTGGTGCGAAAAAATAAAATACATAATAACAGTTGCGT
GGGGGTGCGCCTCAATGGTGGTATACTTTCCTAAGCTTAATATCTCACAA
TNNGGGTAATAACCTCACACCTGCCCTTGTTGTCCGGGAAATAATTTAAC
AAAAATTANGGGAACCAAATAAACAATTATTTCCTCTTCTACCAGGGGAT
ATGGTGCGCGCGGGTTGTTAAATCCTTGGTGGATAAATCGTTTGCGCAAA
ATGTGATACACCCTTTGGTGGTGTGGAAAATATATTAGTTTTTTTTTATA
ACAACTTGCGGCTTTATTATTATACATATTACATGNGTCTCAACACACAT
TACCCCCGGCCTACNTGATGTGGCTTATTCTGGGNCCGCCNTGNNTCAAC
ATTCTTTATTCATCTCCGCTATTTTTCGTTNCTTCCTCCTCTCCACCCAC
CCACTCTCTCCATGNATATTNGGACCGCTGTGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_k24.b1 MSMg01no097_k24.b1 CHROMAT_FILE:
MSMg01no097_k24.b1 PHD_FILE: MSMg01no097_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:31 2005
         (184 letters)



>mm_chr6_104811486_104812069
          Length = 584

 Score =  310 bits (160), Expect = 5e-89
 Identities = 178/184 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggagttcagcagatgtattatttgtttccaaaatatgagttttactctgtcggttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caggagttcagcagatgtattatttgtttccaaaatatgagttttactctgtcggttctg 325

                                                                       
Query: 61  ccgatagaggatctgtgcgaaaggcagagtcaagttcagatgggtttggtgggtactgag 120
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 ccgatagaggatctgtacgaaagggagagtcaagttcagatgggtttggtgggtactgag 265

                                                                       
Query: 121 ggttcagatgctgttatgatgagggacaaggagcgactttaaatcaatgctctcccttat 180
           |||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct: 264 ggttcagatgctgttatgatgagggacaaggaacaagtttaaatcaatgctctcacttat 205

               
Query: 181 gtta 184
           ||||
Sbjct: 204 gtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)